Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq7 515 5e-141
seq2 264 1e-65
seq6 255 7e-63
>seq7
Length=154478
Score = 515 bits (570), Expect = 5e-141
Identities = 711/990 (72%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
|||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 518
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| || | ||||
Sbjct 519 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 578
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 579 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 638
Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174
| | ||||| |||| | ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 639 CGAGAATTGTTGAAACTA-GCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697
Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234
||||| || || || ||||||||||| || || | ||||| | || ||| || |
Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757
Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294
||| || || || ||||| | | ||| || || || ||||| ||||||||||| || ||
Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||
Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877
Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414
||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937
Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474
||| || |||||||||| |||||| | ||||| || || ||||| | || ||
Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997
Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534
||| |||||| ||| ||||| || | |||||| | ||| | | |||||||
Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057
Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594
| |||||| ||| || | |||| | ||||| | | || | | ||| |||||
Sbjct 1058 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1117
Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654
||||| || | ||| ||||| | | ||||||||||| || || || || || |||||
Sbjct 1118 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 1177
Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714
|||||| |||| |||| | ||||| || || || |||||||| || | | ||
Sbjct 1178 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1237
Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774
|| | |||||||||||||||||| || ||||| || || ||||||||||| ||||| |
Sbjct 1238 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1297
Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834
||||| || || || | || ||| ||| ||||| | ||| |||||||| || |
Sbjct 1298 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1357
Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
||||| | ||| | || || || | |||
Sbjct 1358 GTAAAGACGGTTTTCAGTGCTAGTTATCCA 1387
>seq2
Length=19698289
Score = 264 bits (292), Expect = 1e-65
Identities = 357/494 (72%), Gaps = 14/494 (3%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
||||| ||||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 3331702
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| |||| ||||
Sbjct 3331703 CTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 3331762
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 3331763 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 3331822
Query 8116 CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175
| | ||||| || || ||||||| |||| ||||| || |||||||||||
Sbjct 3331823 CGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 3331873
Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235
||||| || || || | |||||||||||| || | ||||| | || ||| || | |
Sbjct 3331874 ACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTT 3331933
Query 8236 TCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA-CCGTGCATAGCACTGAAGAG 8294
|| | || || ||||| | | ||| || || || ||| || || |||||||| || ||
Sbjct 3331934 TCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAG 3331993
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||
Sbjct 3331994 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 3332053
Query 8355 CTCTGCTTGGAATA 8368
||| || |||||||
Sbjct 3332054 CTCAGCCTGGAATA 3332067
>seq6
Length=366924
Score = 255 bits (282), Expect = 7e-63
Identities = 355/494 (72%), Gaps = 14/494 (3%)
Strand=Plus/Minus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
||||| ||||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 334708
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| |||| ||||
Sbjct 334707 CTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 334648
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 334647 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 334588
Query 8116 CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175
| | ||||| || || ||||||| |||| ||||| || |||||||||||
Sbjct 334587 CGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 334537
Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235
||||| || || || | |||||||||||| || | ||||| | || ||| || | |
Sbjct 334536 ACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTT 334477
Query 8236 TCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA-CCGTGCATAGCACTGAAGAG 8294
|| | || || ||||| | | ||| || || || ||| || || |||||||| || ||
Sbjct 334476 TCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAG 334417
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||| ||
Sbjct 334416 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTG 334357
Query 8355 CTCTGCTTGGAATA 8368
||| || |||||||
Sbjct 334356 CTCAGCCTGGAATA 334343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615862346112040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |