Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq7 515 5e-141 seq2 264 1e-65 seq6 255 7e-63 >seq7 Length=154478 Score = 515 bits (570), Expect = 5e-141 Identities = 711/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 518 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 519 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 578 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 579 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 638 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| ||||| || |||| ||||| || || |||||||| Sbjct 639 CGAGAATTGTTGAAACTA-GCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || |||||||||| |||||| | ||||| || || ||||| | || || Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 1058 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1117 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || || || ||||| Sbjct 1118 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 1177 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 1178 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1237 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 1238 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1297 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| || || || | || ||| ||| ||||| | ||| |||||||| || | Sbjct 1298 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1357 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 1358 GTAAAGACGGTTTTCAGTGCTAGTTATCCA 1387 >seq2 Length=19698289 Score = 264 bits (292), Expect = 1e-65 Identities = 357/494 (72%), Gaps = 14/494 (3%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 ||||| ||||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 3331702 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| |||| |||| Sbjct 3331703 CTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 3331762 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 3331763 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 3331822 Query 8116 CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175 | | ||||| || || ||||||| |||| ||||| || ||||||||||| Sbjct 3331823 CGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 3331873 Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235 ||||| || || || | |||||||||||| || | ||||| | || ||| || | | Sbjct 3331874 ACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTT 3331933 Query 8236 TCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA-CCGTGCATAGCACTGAAGAG 8294 || | || || ||||| | | ||| || || || ||| || || |||||||| || || Sbjct 3331934 TCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAG 3331993 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 3331994 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 3332053 Query 8355 CTCTGCTTGGAATA 8368 ||| || ||||||| Sbjct 3332054 CTCAGCCTGGAATA 3332067 >seq6 Length=366924 Score = 255 bits (282), Expect = 7e-63 Identities = 355/494 (72%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 ||||| ||||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 334708 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| |||| |||| Sbjct 334707 CTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 334648 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 334647 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 334588 Query 8116 CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175 | | ||||| || || ||||||| |||| ||||| || ||||||||||| Sbjct 334587 CGAGAATTGTTGAA--------AC-GGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 334537 Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235 ||||| || || || | |||||||||||| || | ||||| | || ||| || | | Sbjct 334536 ACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTT 334477 Query 8236 TCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA-CCGTGCATAGCACTGAAGAG 8294 || | || || ||||| | | ||| || || || ||| || || |||||||| || || Sbjct 334476 TCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAG 334417 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||| || Sbjct 334416 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTG 334357 Query 8355 CTCTGCTTGGAATA 8368 ||| || ||||||| Sbjct 334356 CTCAGCCTGGAATA 334343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862346112040