Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq7 560 3e-155
seq2 241 4e-59
seq6 232 2e-56
>seq7
Length=154478
Score = 560 bits (620), Expect = 3e-155
Identities = 710/974 (73%), Gaps = 2/974 (0%)
Strand=Plus/Minus
Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313
||| | ||||||||||| | |||||||| || || | ||||| || | ||| ||| |
Sbjct 1375 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 1317
Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373
||| || || |||||||||||| || ||| || || || || || || ||||| ||
Sbjct 1316 CGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 1257
Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433
|| ||||| || |||| || || | || || ||||| || || || || ||| | |
Sbjct 1256 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTAT 1197
Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493
||| | | || || ||| | || || |||||||| ||||||||||| | ||||
Sbjct 1196 TCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGA 1137
Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553
||||||||| |||||||||||||| | |||| | || | ||||| | |||| ||
Sbjct 1136 TGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 1077
Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613
| ||| ||||| || |||||||||||||| | || || || ||| | || |||||
Sbjct 1076 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1017
Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673
|||||| || || |||||||| || |||||||||||||| ||| | | ||||| |
Sbjct 1016 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAAT 957
Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733
||| ||||| ||||||||||| |||||| | || || || || || ||||||| ||
Sbjct 956 TGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 897
Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793
| | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 896 GATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 837
Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853
|| ||||| || || | || ||||||||| ||| | |||| || || |
Sbjct 836 TGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 777
Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913
|| | || || || ||| | | || || | ||||||| || || ||||| ||
Sbjct 776 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGA 717
Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973
||| |||||||| ||||| ||||||||||| |||||||| || | || |||||||||||
Sbjct 716 AGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGC 657
Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033
||| || || ||||| ||| | | |||||||| | || || ||||| || ||||||||
Sbjct 656 TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTAT 597
Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093
||||||| |||| | || | ||| |||||||||||| | ||||||||||| || ||
Sbjct 596 TTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 537
Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153
|||||| | | | | | | |||| || || || || |||||||| ||| |||||||
Sbjct 536 CCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 477
Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213
||| |||||||| | || || |||||||| || || || ||||||||||| || |||||
Sbjct 476 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCT 417
Query 42214 TGCATCCGTGGAGG 42227
|| | || ||||
Sbjct 416 AGCTGCTGTTGAGG 403
>seq2
Length=19698289
Score = 241 bits (266), Expect = 4e-59
Identities = 346/488 (71%), Gaps = 10/488 (2%)
Strand=Plus/Minus
Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800
||||||||||||||||| ||||||||||| || ||||||||| | ||||| || || |||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCT-GGTCACGTCGTCACTCATTCG 41859
|| || || | || |||||| || || ||| ||| || || | || |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || | ||| | | || || | ||||||| || |||||||| ||| | ||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
|||||| ||||| |||||||| || |||||||| || | ||||||| | ||
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 3331835
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
|| ||||| ||| | | |||||||| | || || ||||| || ||||||||||||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
| |||| | || | || |||||||||||| | |||||||| || || ||||||||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || || || |||||||| ||| |||||||||| ||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219
| |||| | || || |||||||| || || || ||||||||||| || ||||| || |
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 42220 CGTGGAGG 42227
|| ||||
Sbjct 3331594 TGTTGAGG 3331587
>seq6
Length=366924
Score = 232 bits (256), Expect = 2e-56
Identities = 344/488 (70%), Gaps = 10/488 (2%)
Strand=Plus/Plus
Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800
||||||||||||||| ||||||||||| || ||||||||| | ||||| || || |||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCT-GGTCACGTCGTCACTCATTCG 41859
|| || || | || |||||| || || ||| ||| || || | || |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || | ||| | | || || | ||||||| || |||||||| ||| | ||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
|||||| ||||| |||||||| || |||||||| || | ||||||| | ||
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 334575
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
|| ||||| ||| | | |||||||| | || || ||||| || ||||||||||||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
| |||| | || | || |||||||||||| | |||||||| || || ||||||||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || || || |||||||| ||| |||||||||| ||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219
| |||| | || || |||||||| || || || ||||||||||| || ||||| || |
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 42220 CGTGGAGG 42227
|| ||||
Sbjct 334816 TGTTGAGG 334823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146214387845928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |