Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq7 585 8e-163 seq2 251 2e-62 seq6 242 1e-59 >seq7 Length=154478 Score = 585 bits (648), Expect = 8e-163 Identities = 736/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 1405 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1346 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || | ||||||| |||| ||||| Sbjct 1345 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 1287 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 1286 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1227 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || |||||| | ||||| Sbjct 1226 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTT 1167 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | ||||||||||| || |||| |||||||| ||||| ||||| |||||| | Sbjct 1166 TTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 1107 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 1106 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1047 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 1046 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 987 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 |||||||| || ||| | |||||||| |||| || || |||||| ||||| ||||| Sbjct 986 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 927 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 926 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 867 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 866 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 807 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 806 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 747 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||| ||||| || || ||||| |||||||| || || || || Sbjct 746 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 687 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | || ||||||||||| | |||| || ||| ||| ||||| || | Sbjct 686 TTATTTTGGCCGATTGATTTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 628 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | ||||||| Sbjct 627 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 568 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 567 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 508 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 507 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 448 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 447 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 403 >seq2 Length=19698289 Score = 251 bits (278), Expect = 2e-62 Identities = 367/515 (71%), Gaps = 13/515 (3%) Strand=Plus/Minus Query 42769 TCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCT 42828 |||||||||| | || ||| | | ||||||||||| || |||||||||||||| || Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033 Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 || || ||| | ||||| || || ||||| || || || | || ||||| ||||| Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973 Query 42889 AGTCTTG-TCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGG 42947 |||| | || ||| | | | | ||||| | ||||| ||| ||| | || Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913 Query 42948 CTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGG 43007 |||| ||||||||||| || | ||||| |||||||| || || |||||||| ||||| Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853 Query 43008 ACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067 || | ||||||| || || || ||| ||| ||||| || ||||| | || Sbjct 3331852 CCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802 Query 43068 CGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127 |||||||| || || || |||||||| ||| || | || | || |||||||| || || Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742 Query 43128 CTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTAC 43187 | | |||||||| || || ||||||||| | ||||||| ||| | ||| || ||| Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682 Query 43188 TTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247 ||||||||||||| | || ||||| ||| |||| | || || ||||| || || ||||| Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622 Query 43248 ACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 || |||||||| || || || || | || |||| Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 3331587 >seq6 Length=366924 Score = 242 bits (268), Expect = 1e-59 Identities = 365/515 (71%), Gaps = 13/515 (3%) Strand=Plus/Plus Query 42769 TCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCT 42828 |||||||||| | || ||| | | ||||||||||| || |||||||||||| || Sbjct 334321 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377 Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 || || ||| | ||||| || || ||||| || || || | || ||||| ||||| Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437 Query 42889 AGTCTTG-TCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGG 42947 |||| | || ||| | | | | ||||| | ||||| ||| ||| | || Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497 Query 42948 CTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGG 43007 |||| ||||||||||| || | ||||| |||||||| || || |||||||| ||||| Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557 Query 43008 ACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067 || | ||||||| || || || ||| ||| ||||| || ||||| | || Sbjct 334558 CCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608 Query 43068 CGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127 |||||||| || || || |||||||| ||| || | || | || |||||||| || || Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668 Query 43128 CTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTAC 43187 | | |||||||| || || ||||||||| | ||||||| ||| | ||| || ||| Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728 Query 43188 TTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247 ||||||||||||| | || ||||| ||| |||| | || || ||||| || || ||||| Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788 Query 43248 ACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 || |||||||| || || || || | || |||| Sbjct 334789 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 334823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532788068836