Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq7 585 8e-163
seq2 251 2e-62
seq6 242 1e-59
>seq7
Length=154478
Score = 585 bits (648), Expect = 8e-163
Identities = 736/1005 (73%), Gaps = 4/1005 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | ||| ||| | ||||||||||| |||| ||||||
Sbjct 1405 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1346
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398
||||| ||||||| |||| || | | | || || | ||||||| |||| |||||
Sbjct 1345 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 1287
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1286 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1227
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
|| ||||| || || || |||||| | | |||| | || |||||| | |||||
Sbjct 1226 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTT 1167
Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578
|| | ||||||||||| || |||| |||||||| ||||| ||||| |||||| |
Sbjct 1166 TTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 1107
Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638
|| | || | ||||| | | ||| | | ||| |||| || || ||||||||
Sbjct 1106 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1047
Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698
| | ||| || || ||| | || ||||| |||||| || || || ||||| || ||
Sbjct 1046 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 987
Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758
|||||||| || ||| | |||||||| |||| || || |||||| ||||| |||||
Sbjct 986 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 927
Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818
||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||||||
Sbjct 926 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 867
Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878
|||||| || || || ||| | ||||| || || ||||| || || || | || ||
Sbjct 866 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 807
Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938
|||||||||| | || || ||| | | | | ||||| || ||||| |||
Sbjct 806 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 747
Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998
||| | || |||| ||||| ||||| || || ||||| |||||||| || || || ||
Sbjct 746 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 687
Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057
||| ||||| || | || ||||||||||| | |||| || ||| ||| ||||| || |
Sbjct 686 TTATTTTGGCCGATTGATTTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 628
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| || || || |||||||| ||| || | || | |||||||
Sbjct 627 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 568
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | ||
Sbjct 567 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 508
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || |||||||||||||||| | || ||||| |||||||| | || || ||||| |
Sbjct 507 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 448
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
| || ||||| || |||||||| || || || || | || ||||
Sbjct 447 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 403
>seq2
Length=19698289
Score = 251 bits (278), Expect = 2e-62
Identities = 367/515 (71%), Gaps = 13/515 (3%)
Strand=Plus/Minus
Query 42769 TCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCT 42828
|||||||||| | || ||| | | ||||||||||| || |||||||||||||| ||
Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033
Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888
|| || ||| | ||||| || || ||||| || || || | || ||||| |||||
Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973
Query 42889 AGTCTTG-TCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGG 42947
|||| | || ||| | | | | ||||| | ||||| ||| ||| | ||
Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913
Query 42948 CTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGG 43007
|||| ||||||||||| || | ||||| |||||||| || || |||||||| |||||
Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853
Query 43008 ACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067
|| | ||||||| || || || ||| ||| ||||| || ||||| | ||
Sbjct 3331852 CCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802
Query 43068 CGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127
|||||||| || || || |||||||| ||| || | || | || |||||||| || ||
Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742
Query 43128 CTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTAC 43187
| | |||||||| || || ||||||||| | ||||||| ||| | ||| || |||
Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682
Query 43188 TTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247
||||||||||||| | || ||||| ||| |||| | || || ||||| || || |||||
Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622
Query 43248 ACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
|| |||||||| || || || || | || ||||
Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 3331587
>seq6
Length=366924
Score = 242 bits (268), Expect = 1e-59
Identities = 365/515 (71%), Gaps = 13/515 (3%)
Strand=Plus/Plus
Query 42769 TCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCT 42828
|||||||||| | || ||| | | ||||||||||| || |||||||||||| ||
Sbjct 334321 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377
Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888
|| || ||| | ||||| || || ||||| || || || | || ||||| |||||
Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437
Query 42889 AGTCTTG-TCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGG 42947
|||| | || ||| | | | | ||||| | ||||| ||| ||| | ||
Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497
Query 42948 CTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGG 43007
|||| ||||||||||| || | ||||| |||||||| || || |||||||| |||||
Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557
Query 43008 ACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067
|| | ||||||| || || || ||| ||| ||||| || ||||| | ||
Sbjct 334558 CCGATTGATCTTCC-------GT--TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608
Query 43068 CGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127
|||||||| || || || |||||||| ||| || | || | || |||||||| || ||
Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668
Query 43128 CTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTAC 43187
| | |||||||| || || ||||||||| | ||||||| ||| | ||| || |||
Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728
Query 43188 TTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247
||||||||||||| | || ||||| ||| |||| | || || ||||| || || |||||
Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788
Query 43248 ACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
|| |||||||| || || || || | || ||||
Sbjct 334789 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 334823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143532788068836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |