Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq7 506 6e-139
seq2 203 1e-47
seq6 194 5e-45
>seq7
Length=154478
Score = 506 bits (560), Expect = 6e-139
Identities = 702/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || ||||||
Sbjct 414 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 473
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| || | ||| | | ||| ||||||||
Sbjct 474 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 533
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| || | ||||| | || || | |
Sbjct 534 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 593
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
|| || || || |||||||||| || | |||||||| | |||||| || || |||
Sbjct 594 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 653
Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176
|| ||||| || ||||| |||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 654 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 713
Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236
||||| |||||||| || | || || | ||| || | | ||||| |||||
Sbjct 714 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 773
Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296
|| | ||||| ||||| || ||||||||| ||||| | || ||||| ||
Sbjct 774 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 833
Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356
||||| ||||| ||| || ||||||||||| || || || || || || ||||||||
Sbjct 834 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 893
Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416
| ||||||||| |||||||||||||| || |||||||| |||||| |||||| || ||
Sbjct 894 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 953
Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476
|| | ||||| | ||||| || || || || | | || |||| ||||||||||
Sbjct 954 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 1013
Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536
||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 1014 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1073
Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596
||||| || | ||| ||||| | | ||| |||| ||| || ||||| |||||||||||
Sbjct 1074 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCAT 1133
Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656
|| || | | ||||||||||||| ||||||||||| | ||| || || ||| |
Sbjct 1134 TCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTA 1193
Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716
|| | | || || || || |||||||||||||| | | || || ||||| || |||
Sbjct 1194 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1253
Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776
|| || ||||| |||||||| || || || || ||||| || | |||||| | |||
Sbjct 1254 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTT 1313
Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836
|| | | |||| || ||||| | || || |||||||| | || |||||||| |||
Sbjct 1314 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1373
Query 26837 GTACTTGTAACCCACTCACAAAA 26859
|| || || | ||| | ||| ||
Sbjct 1374 GTGCTAGTTATCCAGTTACAGAA 1396
>seq2
Length=19698289
Score = 203 bits (224), Expect = 1e-47
Identities = 336/482 (70%), Gaps = 16/482 (3%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || | ||||
Sbjct 3331598 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTA 3331657
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | || || || ||| ||||||||
Sbjct 3331658 GCACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 3331716
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || |||||||||||||| || ||||| |||| ||||| | || || |
Sbjct 3331717 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 3331776
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || |||||||||| || | |||||||| | |||||| || || ||
Sbjct 3331777 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 3331836
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
|| | || || |||| ||||| || || || ||||| ||||| || || ||
Sbjct 3331837 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 3331887
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
| ||| ||||| || || | || || | ||| || | | ||| | |||||
Sbjct 3331888 TTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCT 3331947
Query 26236 AATAAGTGAGGAAGTAACCA---AACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292
|| | ||||| |||| ||| || || |||||| || || | || |||||
Sbjct 3331948 GATCAAACTAGAAGTTACCAAGGAAC--CCATGTATAGCACTAAATAGGGAGCCGCCGAA 3332005
Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352
|| ||||| ||||| ||| || ||||||||||| || || || || || || |||||
Sbjct 3332006 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 3332065
Query 26353 TA 26354
||
Sbjct 3332066 TA 3332067
>seq6
Length=366924
Score = 194 bits (214), Expect = 5e-45
Identities = 334/482 (69%), Gaps = 16/482 (3%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || | ||||
Sbjct 334812 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTA 334753
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | || || || ||| ||||||||
Sbjct 334752 GCACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 334694
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || |||||||||||||| || ||||| |||| ||||| | || || |
Sbjct 334693 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 334634
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || |||||||||| || | |||||||| | |||||| || || ||
Sbjct 334633 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 334574
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
|| | || || |||| ||||| || || || ||||| ||||| || || ||
Sbjct 334573 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 334523
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
| ||| ||||| || || | || || | ||| || | | ||| | |||||
Sbjct 334522 TTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCT 334463
Query 26236 AATAAGTGAGGAAGTAACCA---AACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292
|| | ||||| |||| ||| || || |||||| || || | || |||||
Sbjct 334462 GATCAAACTAGAAGTTACCAAGGAAC--CCATGTATAGCACTAAATAGGGAGCCGCCGAA 334405
Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352
|| ||||| ||||| ||| || ||||||||||| || || || || || |||||
Sbjct 334404 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAA 334345
Query 26353 TA 26354
||
Sbjct 334344 TA 334343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147711987721440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |