Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq7 506 6e-139 seq2 203 1e-47 seq6 194 5e-45 >seq7 Length=154478 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 414 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 473 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| || | ||| | | ||| |||||||| Sbjct 474 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 533 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | | Sbjct 534 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 593 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| || | |||||||| | |||||| || || ||| Sbjct 594 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 653 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || ||||| |||| ||||| || ||||| ||||| ||||| || || || Sbjct 654 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 713 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| || | || || | ||| || | | ||||| ||||| Sbjct 714 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 773 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||||| | || ||||| || Sbjct 774 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 833 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 834 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 893 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| |||||| || || Sbjct 894 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 953 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||| | ||||| || || || || | | || |||| |||||||||| Sbjct 954 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 1013 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 1014 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1073 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| |||| ||| || ||||| ||||||||||| Sbjct 1074 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCAT 1133 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||||| ||||||||||| | ||| || || ||| | Sbjct 1134 TCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTA 1193 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | | || || ||||| || ||| Sbjct 1194 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1253 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776 || || ||||| |||||||| || || || || ||||| || | |||||| | ||| Sbjct 1254 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTT 1313 Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836 || | | |||| || ||||| | || || |||||||| | || |||||||| ||| Sbjct 1314 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1373 Query 26837 GTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 1374 GTGCTAGTTATCCAGTTACAGAA 1396 >seq2 Length=19698289 Score = 203 bits (224), Expect = 1e-47 Identities = 336/482 (70%), Gaps = 16/482 (3%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || | |||| Sbjct 3331598 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTA 3331657 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | || || || ||| |||||||| Sbjct 3331658 GCACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 3331716 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| |||| ||||| | || || | Sbjct 3331717 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 3331776 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || |||||||||| || | |||||||| | |||||| || || || Sbjct 3331777 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 3331836 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 || | || || |||| ||||| || || || ||||| ||||| || || || Sbjct 3331837 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 3331887 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 | ||| ||||| || || | || || | ||| || | | ||| | ||||| Sbjct 3331888 TTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCT 3331947 Query 26236 AATAAGTGAGGAAGTAACCA---AACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 || | ||||| |||| ||| || || |||||| || || | || ||||| Sbjct 3331948 GATCAAACTAGAAGTTACCAAGGAAC--CCATGTATAGCACTAAATAGGGAGCCGCCGAA 3332005 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || ||||| ||||| ||| || ||||||||||| || || || || || || ||||| Sbjct 3332006 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 3332065 Query 26353 TA 26354 || Sbjct 3332066 TA 3332067 >seq6 Length=366924 Score = 194 bits (214), Expect = 5e-45 Identities = 334/482 (69%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || | |||| Sbjct 334812 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTA 334753 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | || || || ||| |||||||| Sbjct 334752 GCACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACTGA 334694 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| |||| ||||| | || || | Sbjct 334693 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 334634 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || |||||||||| || | |||||||| | |||||| || || || Sbjct 334633 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 334574 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 || | || || |||| ||||| || || || ||||| ||||| || || || Sbjct 334573 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 334523 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 | ||| ||||| || || | || || | ||| || | | ||| | ||||| Sbjct 334522 TTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCT 334463 Query 26236 AATAAGTGAGGAAGTAACCA---AACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 || | ||||| |||| ||| || || |||||| || || | || ||||| Sbjct 334462 GATCAAACTAGAAGTTACCAAGGAAC--CCATGTATAGCACTAAATAGGGAGCCGCCGAA 334405 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || ||||| ||||| ||| || ||||||||||| || || || || || ||||| Sbjct 334404 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAA 334345 Query 26353 TA 26354 || Sbjct 334344 TA 334343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711987721440