Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq7 558 4e-154
seq2 262 5e-65
seq6 253 2e-62
>seq7
Length=154478
Score = 558 bits (618), Expect = 4e-154
Identities = 724/998 (73%), Gaps = 12/998 (1%)
Strand=Plus/Minus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
|||| | ||| ||||| |||| ||||| | || | || ||||| |||||| | |
Sbjct 1395 TCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1336
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||| ||||||||||| ||||
Sbjct 1335 TGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTC 1276
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| |
Sbjct 1275 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 1216
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| || || ||||| || | |||| ||| || ||||| | || || || || || |
Sbjct 1215 TTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCT 1156
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| | ||||||| ||| | ||||| || ||||||| |||| | ||
Sbjct 1155 GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTC 1096
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| ||||| | | || | ||| | | | |||||| ||||||||||| || ||
Sbjct 1095 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1039
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | |||||| |
Sbjct 1038 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | | ||||| | ||||| || ||| ||||||| |||||||| || |
Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
||||||||||||| |||| |||| | || ||||| || || ||||| || ||||||||||
Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || ||||| ||||||||| |
Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| || || | || ||| || | |
Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || |
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | || ||||| ||||| |||||||| || | | | || |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
| || ||||| || || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863
|||| || |||||||| |||||||| || ||||| || |||| || || ||
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 502
Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923
||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || ||||
Sbjct 501 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 442
Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961
| ||||||||||||||||| ||||| ||||||| ||||
Sbjct 441 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
>seq2
Length=19698289
Score = 262 bits (290), Expect = 5e-65
Identities = 354/490 (72%), Gaps = 16/490 (3%)
Strand=Plus/Minus
Query 155476 TTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTG 155535
||||| || || ||||| || ||||||||||| || |||||| | || ||||| |||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGG-TTCATTGGTGACATCTTCACTAATCCG 155594
||||| || || || || |||||| || || ||| ||||| || ||| | ||| |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654
||||| | || | || ||| || | ||||||| ||||| ||||||||| ||||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714
||| |||||||| ||||||||||| || || || || | ||||||| || ||
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 3331835
Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGC 155774
|||||| || | | | || |||||| | || || ||||| || || | || |||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 155775 AACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTC 155834
|||||| | ||| | || ||||| |||||||| || ||||| || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 155835 TGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891
||||| || |||| || || || ||| ||||| || ||| ||||||| ||
Sbjct 3331714 AGTAGTTGA---TAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 3331658
Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGC 155951
| ||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| ||
Sbjct 3331657 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598
Query 155952 TGCTGCTGAG 155961
||||| ||||
Sbjct 3331597 TGCTGTTGAG 3331588
>seq6
Length=366924
Score = 253 bits (280), Expect = 2e-62
Identities = 352/490 (72%), Gaps = 16/490 (3%)
Strand=Plus/Plus
Query 155476 TTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTG 155535
||||| || || ||| || ||||||||||| || |||||| | || ||||| |||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGG-TTCATTGGTGACATCTTCACTAATCCG 155594
||||| || || || || |||||| || || ||| ||||| || ||| | ||| |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654
||||| | || | || ||| || | ||||||| ||||| ||||||||| ||||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714
||| |||||||| ||||||||||| || || || || | ||||||| || ||
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 334575
Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGC 155774
|||||| || | | | || |||||| | || || ||||| || || | || |||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 155775 AACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTC 155834
|||||| | ||| | || ||||| |||||||| || ||||| || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 155835 TGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891
||||| || |||| || || || ||| ||||| || ||| ||||||| ||
Sbjct 334696 AGTAGTTGA---TAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 334752
Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGC 155951
| ||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| ||
Sbjct 334753 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812
Query 155952 TGCTGCTGAG 155961
||||| ||||
Sbjct 334813 TGCTGTTGAG 334822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584835148826920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |