Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq7 558 4e-154 seq2 262 5e-65 seq6 253 2e-62 >seq7 Length=154478 Score = 558 bits (618), Expect = 4e-154 Identities = 724/998 (73%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| |||| ||||| | || | || ||||| |||||| | | Sbjct 1395 TCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1336 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||||||||| |||| Sbjct 1335 TGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTC 1276 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| | Sbjct 1275 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 1216 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || || ||||| || | |||| ||| || ||||| | || || || || || | Sbjct 1215 TTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCT 1156 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||| | ||||| || ||||||| |||| | || Sbjct 1155 GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTC 1096 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | ||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 1095 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1039 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | |||||| | Sbjct 1038 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | | ||||| | ||||| || ||| ||||||| |||||||| || | Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 ||||||||||||| |||| |||| | || ||||| || || ||||| || |||||||||| Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || ||||| ||||||||| | Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| || || | || ||| || | | Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || | Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | || ||||| ||||| |||||||| || | | | || |||||| | | Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 | || ||||| || || | || ||| |||||| | ||| | || ||||| |||| Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 502 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || |||| Sbjct 501 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 442 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 | ||||||||||||||||| ||||| ||||||| |||| Sbjct 441 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 >seq2 Length=19698289 Score = 262 bits (290), Expect = 5e-65 Identities = 354/490 (72%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 155476 TTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTG 155535 ||||| || || ||||| || ||||||||||| || |||||| | || ||||| ||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGG-TTCATTGGTGACATCTTCACTAATCCG 155594 ||||| || || || || |||||| || || ||| ||||| || ||| | ||| | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654 ||||| | || | || ||| || | ||||||| ||||| ||||||||| |||| Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714 ||| |||||||| ||||||||||| || || || || | ||||||| || || Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 3331835 Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGC 155774 |||||| || | | | || |||||| | || || ||||| || || | || ||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 155775 AACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTC 155834 |||||| | ||| | || ||||| |||||||| || ||||| || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 155835 TGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891 ||||| || |||| || || || ||| ||||| || ||| ||||||| || Sbjct 3331714 AGTAGTTGA---TAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 3331658 Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGC 155951 | ||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| || Sbjct 3331657 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598 Query 155952 TGCTGCTGAG 155961 ||||| |||| Sbjct 3331597 TGCTGTTGAG 3331588 >seq6 Length=366924 Score = 253 bits (280), Expect = 2e-62 Identities = 352/490 (72%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 155476 TTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTG 155535 ||||| || || ||| || ||||||||||| || |||||| | || ||||| ||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGG-TTCATTGGTGACATCTTCACTAATCCG 155594 ||||| || || || || |||||| || || ||| ||||| || ||| | ||| | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654 ||||| | || | || ||| || | ||||||| ||||| ||||||||| |||| Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714 ||| |||||||| ||||||||||| || || || || | ||||||| || || Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 334575 Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGC 155774 |||||| || | | | || |||||| | || || ||||| || || | || ||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 155775 AACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTC 155834 |||||| | ||| | || ||||| |||||||| || ||||| || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 155835 TGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891 ||||| || |||| || || || ||| ||||| || ||| ||||||| || Sbjct 334696 AGTAGTTGA---TAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 334752 Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGC 155951 | ||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| || Sbjct 334753 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812 Query 155952 TGCTGCTGAG 155961 ||||| |||| Sbjct 334813 TGCTGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835148826920