Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq7 578 4e-160 seq2 295 8e-75 seq6 286 4e-72 >seq7 Length=154478 Score = 578 bits (640), Expect = 4e-160 Identities = 707/962 (73%), Gaps = 12/962 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 517 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 518 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 577 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 578 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 637 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||| ||||| || || || || || |||||||| Sbjct 638 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| || ||||| | ||||||| |||||| ||||| || || | || || Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 1058 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1114 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 || || || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 1115 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAA 1174 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 || || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 1175 TCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 1234 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 1235 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1294 Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || || || | ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 1295 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 1354 Query 68303 AA 68304 || Sbjct 1355 AA 1356 >seq2 Length=19698289 Score = 295 bits (326), Expect = 8e-75 Identities = 362/493 (73%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 || |||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 3331701 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| || ||||| || |||||||| |||||||| | Sbjct 3331702 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 3331761 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 3331762 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3331821 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| |||||||||| || || || || ||||||||||| Sbjct 3331822 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 3331872 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| | ||||||||| ||||| ||||||| | || || || | Sbjct 3331873 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3331932 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCG-TGCATAGCACTAAAGA 67764 || | ||||| ||||| | | |||||| || | ||||| || ||||||||||| | Sbjct 3331933 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 3331992 Query 67765 GTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGT 67824 | || || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||| Sbjct 3331993 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGT 3332052 Query 67825 GCTCTGCTTGGAA 67837 |||| || ||||| Sbjct 3332053 GCTCAGCCTGGAA 3332065 >seq6 Length=366924 Score = 286 bits (316), Expect = 4e-72 Identities = 360/493 (73%), Gaps = 16/493 (3%) Strand=Plus/Minus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 || |||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 334709 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| || ||||| || |||||||| |||||||| | Sbjct 334708 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 334649 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 334648 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 334589 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| |||||||||| || || || || ||||||||||| Sbjct 334588 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 334538 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| | ||||||||| ||||| ||||||| | || || || | Sbjct 334537 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATT 334478 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAG-TAACAAGAGAACCGTGCATAGCACTAAAGA 67764 || | ||||| ||||| | | ||||| || |||| | || || ||||||||||| | Sbjct 334477 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 334418 Query 67765 GTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGT 67824 | || || ||||||||||| ||||| || | ||| || |||||||||||||| ||| || Sbjct 334417 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGT 334358 Query 67825 GCTCTGCTTGGAA 67837 |||| || ||||| Sbjct 334357 GCTCAGCCTGGAA 334345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947150392120