Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq7 578 4e-160
seq2 295 8e-75
seq6 286 4e-72
>seq7
Length=154478
Score = 578 bits (640), Expect = 4e-160
Identities = 707/962 (73%), Gaps = 12/962 (1%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
||| ||||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 517
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 518 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 577
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 578 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 637
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| ||||| ||||| ||||| || || || || || ||||||||
Sbjct 638 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| ||||||||||| ||||| ||||||| | || || || |
Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765
|| || ||||| ||||| | | |||||| || | ||||| |||||||||||||| ||
Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817
Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|| || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||
Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877
Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885
||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||
Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937
Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945
||| ||| || ||||| | ||||||| |||||| ||||| || || | || ||
Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997
Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005
||| || ||||| ||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057
Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062
|||||| | | | ||| | || | | ||||| | || | |||| ||||
Sbjct 1058 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1114
Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122
|| || || || | ||| ||||| | | ||| ||||||||||| || || || || |
Sbjct 1115 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAA 1174
Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182
|| || || ||| |||||| || ||||| ||||| || ||||| ||||| | ||
Sbjct 1175 TCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 1234
Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242
|| || | ||||||||| | |||||||| ||||| |||||||| || |||||||||||
Sbjct 1235 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1294
Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|| || || || | ||| | | ||| ||| |||||||| ||||| ||||| ||
Sbjct 1295 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 1354
Query 68303 AA 68304
||
Sbjct 1355 AA 1356
>seq2
Length=19698289
Score = 295 bits (326), Expect = 8e-75
Identities = 362/493 (73%), Gaps = 16/493 (3%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
|| |||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 3331701
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| || ||||| || |||||||| |||||||| |
Sbjct 3331702 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 3331761
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 3331762 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3331821
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| |||||||||| || || || || |||||||||||
Sbjct 3331822 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 3331872
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| | ||||||||| ||||| ||||||| | || || || |
Sbjct 3331873 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3331932
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCG-TGCATAGCACTAAAGA 67764
|| | ||||| ||||| | | |||||| || | ||||| || ||||||||||| |
Sbjct 3331933 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 3331992
Query 67765 GTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGT 67824
| || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||
Sbjct 3331993 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGT 3332052
Query 67825 GCTCTGCTTGGAA 67837
|||| || |||||
Sbjct 3332053 GCTCAGCCTGGAA 3332065
>seq6
Length=366924
Score = 286 bits (316), Expect = 4e-72
Identities = 360/493 (73%), Gaps = 16/493 (3%)
Strand=Plus/Minus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
|| |||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 334709
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| || ||||| || |||||||| |||||||| |
Sbjct 334708 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 334649
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 334648 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 334589
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| |||||||||| || || || || |||||||||||
Sbjct 334588 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 334538
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| | ||||||||| ||||| ||||||| | || || || |
Sbjct 334537 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATT 334478
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAG-TAACAAGAGAACCGTGCATAGCACTAAAGA 67764
|| | ||||| ||||| | | ||||| || |||| | || || ||||||||||| |
Sbjct 334477 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 334418
Query 67765 GTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGT 67824
| || || ||||||||||| ||||| || | ||| || |||||||||||||| ||| ||
Sbjct 334417 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGT 334358
Query 67825 GCTCTGCTTGGAA 67837
|||| || |||||
Sbjct 334357 GCTCAGCCTGGAA 334345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566947150392120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |