Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 136 7e-27 seq1 116 7e-21 seq4 113 8e-20 seq3 91.5 3e-13 >seq5 Length=26975502 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| | || |||| || | || | ||||| || || || || Sbjct 14953287 ATACCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCT 14953346 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | |||||| | ||||| || ||||| |||| |||||||||||| ||| Sbjct 14953347 GCAAGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGA 14953406 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || | |||||| || ||||| || || | ||| | ||| |||||| || ||| |||| Sbjct 14953407 GGGACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 14953466 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || |||||||| || ||||| || |||||||| ||||| Sbjct 14953467 ACTTCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| |||| ||| | || | |||||| || || || || Sbjct 6973778 ATACCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 6973837 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| |||| || || |||||||| || | ||||| || || || Sbjct 6973838 GCAAGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGT 6973897 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| || || | ||| | ||| ||| || || || |||| Sbjct 6973898 GGGATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 6973957 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || || || || ||||| |||||||| Sbjct 6973958 ACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 Score = 116 bits (128), Expect = 7e-21 Identities = 178/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| || || || |||| ||| | || | ||||| ||| || Sbjct 772661 ATTTGCATACCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTG 772720 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || | ||| |||| ||||| ||||| || |||||||| || ||| Sbjct 772721 TAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGA 772780 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || || || || || | || | ||| || || || || Sbjct 772781 TCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAG 772840 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 |||||| || ||||| ||||| || || || || ||||| || || |||||||| | | Sbjct 772841 CTCTCAACCTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCATCTGA 772900 Query 193365 TTAGTAAAATAAT 193377 | ||||| ||| Sbjct 772901 --AATAAAACAAT 772911 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | ||||| |||| ||| | || | ||| || ||| || Sbjct 772433 ATTTGCATACCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTG 772492 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | ||||| || || | || || |||||||| || | |||||| ||| Sbjct 772493 TAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGA 772552 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| || || || || || | ||| | || |||||| || || Sbjct 772553 TCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTGTCAGAG 772612 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || || || || || || ||||| |||||||| Sbjct 772613 CTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || ||||| | ||| | ||| || || || || || Sbjct 772211 ATACCACCACGGAGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCT 772270 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || |||||||| || | ||||| ||||| ||| Sbjct 772271 GCAAGGGTGCGTCCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGA 772330 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| || || | ||| | ||| ||| || || ||| |||| Sbjct 772331 GGAATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCA 772390 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || || || || ||||| |||||||| Sbjct 772391 ACCTCAAGGGTGATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 772440 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || | || |||| || | ||| | ||||| || || || || Sbjct 6974234 ATACCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCA 6974293 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || || || || ||||| || || |||||| Sbjct 6974294 GCCAAGGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGA 6974353 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| || || || || |||| Sbjct 6974354 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCA 6974413 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| || || ||||| || || |||||||| Sbjct 6974414 ACCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463 >seq1 Length=30427671 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||||| || || |||| ||| | || | |||||| || || || || | Sbjct 8315167 ACCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGC 8315108 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || ||||| ||| || |||||||||||||| || || || | || ||||| || || Sbjct 8315107 TAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || || | ||| | ||| || || || || || || || Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 |||| ||||| || || || ||||| ||||| || || || |||||||| || Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 8314934 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || || |||| |||||||||||| ||||| |||||||| || ||||| || Sbjct 20549450 TGTTTACCCGCGAATATTAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGGATC 20549391 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| |||||| || | | |||||||||||| || || |||| ||| Sbjct 20549390 TTAGCTTTAACATTGTCAATAGTGTCTGTACTCTCAACTTCTAGGGTAATGGTTTAACCG 20549331 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| Sbjct 20549330 GTAAGGGTCTTGACGAATATCTGCAT 20549305 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| |||| ||| | || | ||| || || || || || Sbjct 24277046 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 24277105 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | || || |||||||| || | ||||| ||||| ||| Sbjct 24277106 GCGAGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGA 24277165 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| ||||| || || || | || | ||| ||||||||| ||| ||| Sbjct 24277166 GGGATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCA 24277225 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| ||||| | || || ||||| || ||||| Sbjct 24277226 ACCTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | ||||||||| || || || || |||||||| || || || Sbjct 20549906 TGCTTTCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCCTGAATC 20549847 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || || ||||| || |||||||||||| || || ||||| || Sbjct 20549846 TTGGCCTTCAGGTTATCGATTGTATCAGAGCTCTCAACTTCTAGGGTAATGGTTTTGCCG 20549787 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| Sbjct 20549786 GTAAGGGTCTTCACGAAAATCTGCAT 20549761 >seq4 Length=18585056 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || | |||| || | ||| | ||| || ||| || |||||| Sbjct 2719244 ATACCTCCACGCAGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCG 2719185 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||||| ||| || | |||||||||||| || || |||||||| || || ||| Sbjct 2719184 GCCAAAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGA 2719125 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| || |||| ||| | || ||| || || ||| ||| Sbjct 2719124 GGAATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCC 2719065 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| |||||||| || || | ||| || || || || ||||| Sbjct 2719064 ACCTCCAAAGTGATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| || | ||||| ||| || ||| || ||||| | || |||||| ||| || Sbjct 1279000 ACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTACCATCTTCA 1279059 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||||||||| || || |||||||| || || || || || || ||||| || || Sbjct 1279060 AGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGG 1279119 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | ||| ||||| || || ||| || || | ||| ||||| || Sbjct 1279120 ATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTT 1279179 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| || ||||| Sbjct 1279180 CCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||||||||| || || ||||| || || ||||| |||||||| || Sbjct 2719626 ATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTT 2719567 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | || ||| || || || ||| || || | ||| || Sbjct 2719566 ATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAAAGTGAT 2719507 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || || || || ||||| Sbjct 2719506 AGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471 >seq3 Length=23459830 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || ||||||| ||| | |||||| || || || ||| Sbjct 3005543 ATACCACCGCAAAGACGAAGGACAAGATGCAGTGTTGACTCTTTCTGGATGTTGTAATCG 3005602 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||| || || ||||| || | |||||| || |||| Sbjct 3005603 GCAAGAGTACGACCATCCTCGAGTTGCTTACCTGCAAAGATAAGTCTCTGCTGGCGAGGA 3005662 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 | ||||||||||||||||| || |||| || | || ||||| || || | Sbjct 3005663 AGGATTCCTTCTTTATCTTGGATCTTGGCCTTGACGTTATCGATAGTGTCTGAGCTTTTG 3005722 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || || | ||||| |||||||| Sbjct 3005723 ACCTCAAGGGTTATGGTCTTTCCCGTAAGAGTCTGCACAAAGATTTGCAT 3005772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654321280240