Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 seq1 95.1 2e-14 seq4 89.7 8e-13 >seq5 Length=26975502 Score = 161 bits (178), Expect = 1e-34 Identities = 377/562 (67%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 18148 ATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACT 18207 ||||| ||||| || |||||| ||| | |||||| ||||| || || |||||||| Sbjct 16408805 ATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGA 16408746 Query 18208 AAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACT 18267 ||| || | || ||||||| ||||| ||| || | ||| |||||||| || |||| Sbjct 16408745 AAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 16408686 Query 18268 AGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT 18327 || ||||||||||| |||||||| || ||||||| | ||| ||||| || || || Sbjct 16408685 GGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCT---TTG 16408629 Query 18328 ATTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385 | | || || |||||||| ||||||||| ||| ||| || || | Sbjct 16408628 A--GATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTC--ACAAGGAATGGTT 16408573 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || || ||| ||| | || |||| | |||||| ||||| ||||| ||||||| | Sbjct 16408572 TCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGG 16408513 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | | |||||| || || || || | || || || || || || | || || | | | Sbjct 16408512 AGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGA 16408453 Query 18506 GCCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564 || || | ||| |||| ||| ||||| | | |||||| ||| || || Sbjct 16408452 GCTTCTGAGAT-CTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCC 16408394 Query 18565 GTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAA---ATGTTTTTCATT-ATCCT 18620 ||| | | ||||| || || | || | ||||||||| | ||| || || | Sbjct 16408393 GTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAG 16408334 Query 18621 TGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAG 18680 |||| || | ||| || | |||| || ||||| |||||||| | |||||| || | Sbjct 16408333 TGAG-TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGG 16408275 Query 18681 ATGATTCGGCCTGTTTGTACAT 18702 ||| |||||| | |||||||| Sbjct 16408274 ATGCTTCGGCTTTCTTGTACAT 16408253 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||| || || ||||| || || || || ||| Sbjct 772668 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 772609 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || || || || ||||| || ||||| || || Sbjct 772608 GACACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAG 772549 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||||||||| ||||| |||||| | | || || || Sbjct 772548 CAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAAC 772489 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| |||| |||||||| ||| | | | ||||| ||| Sbjct 772488 AT-TCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGTCTCAGAGGTGGT 772441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || | || || || ||| Sbjct 772440 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACAATCACCCTTGAGGTTGAGAGTTCA 772381 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||||||||| || || ||||| || || Sbjct 772380 GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATTCCTCCGGATCAG 772321 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||||||||||||||||||| | || | ||||||| | Sbjct 772320 CAGAGGCTTATCTTTGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTGCAGATTACA-- 772263 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| |||| |||||| | ||| Sbjct 772262 ACATCCAAAAGGAGTCGACACTTCATCTTGTG 772231 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| ||||| ||||| || || || ||| ||| Sbjct 6974235 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAAACCATTACCTTGGAGGTTGAAAGCTCT 6974176 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || || || || ||||| || ||||| || || Sbjct 6974175 GACACTATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 6974116 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| || ||||||||||| |||||| || ||| | | || || | Sbjct 6974115 CAAAGACTTATTTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCTGACTACA-- 6974058 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 ||||||||| ||| | || ||||| Sbjct 6974057 ATATCCAAAAGGAGTCTACTCTTCA 6974033 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || || || ||| Sbjct 6974463 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTCT 6974404 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || |||||||| ||||| || || Sbjct 6974403 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6974344 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||||||||| |||||| | | || || | ||||| || Sbjct 6974343 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACCTTGGCTGATTACAAC 6974284 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || || || || | || |||||||| ||| Sbjct 6974283 ATCCAGAAAGAATCAACACTCCACTTGGTTCTCAGGTTAAGAGGTGGT 6974236 >seq1 Length=30427671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || ||||| || || || || || ||| |||| Sbjct 24277275 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 24277216 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || || ||||| ||||| || ||||| || || Sbjct 24277215 GATACTATTGACAATGTTAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 24277156 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || | || | ||||||||||||||| ||||| Sbjct 24277155 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGA 24277121 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || || | ||||| | || || || || || || ||||| || ||| Sbjct 8314934 AAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAA 8314993 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 || || | || || |||||| || || ||||| || ||||| || || || Sbjct 8314994 TCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCG 8315053 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||| | ||||| | ||||| || || | |||||| ||||| || | ||| Sbjct 8315054 GATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGAT 8315113 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || |||||| ||||||||||||| || || | | ||||| |||| Sbjct 8315114 TACAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTG 8315168 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || ||||| ||||| ||||||| || ||| Sbjct 20549761 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 20549820 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| |||| || || || || |||||||| || || ||||| ||| Sbjct 20549821 GATACAATCGATAACCTGAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCAA 20549880 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || ||||||||||||||| | ||| | ||||||| | Sbjct 20549881 CAGAGACTCATCTTTGCAGGAAAGCAGCTCGAAGATGGTCGGACTCTTGCAGATTACA-- 20549938 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||| ||| | || ||||| Sbjct 20549939 ACATCCAAAAGGAGTCAACACTTCA 20549963 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 || ||| || ||||| || ||||| || || ||||| || ||||| | ||| |||||||| Sbjct 11218927 AAAACAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCA 11218868 Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTT 156028 ||| |||||| ||||| ||| | ||||| || || ||||| |||| ||||| || Sbjct 11218867 GCTTGAAGATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTT 11218808 Query 156029 AGTGTTAAG 156037 || || || Sbjct 11218807 GGTATTGAG 11218799 >seq4 Length=18585056 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| ||||| || || || || || ||| Sbjct 1279208 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 1279149 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || || || ||||| || || || || || || Sbjct 1279148 GACACTATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 1279089 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || || || |||||| |||||||| | || || || Sbjct 1279088 CAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTAGAACTTTGGCTGACTACAAC 1279029 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || ||||| Sbjct 1279028 ATTCAGAAGGAGTCTACACTTCACTTGGTGTT 1278997 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | || ||||| || ||||| | || || || ||| Sbjct 2588732 ATGCAGATTTTCGTTAAAACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGCTCT 2588673 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || |||||||| || || || ||||| || || Sbjct 2588672 GACACCATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCGGACCAG 2588613 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || || || ||||||||| | ||||| || Sbjct 2588612 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAGGACGGCAGAACTTTGGCGGATTACAAC 2588553 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | ||||||||||| || || Sbjct 2588552 ATCCAGAAGGAGTCTACGCTTCATTTGGTCTT 2588521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871935961200