Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5 161 1e-34
seq1 95.1 2e-14
seq4 89.7 8e-13
>seq5
Length=26975502
Score = 161 bits (178), Expect = 1e-34
Identities = 377/562 (67%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 18148 ATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACT 18207
||||| ||||| || |||||| ||| | |||||| ||||| || || ||||||||
Sbjct 16408805 ATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGA 16408746
Query 18208 AAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACT 18267
||| || | || ||||||| ||||| ||| || | ||| |||||||| || ||||
Sbjct 16408745 AAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 16408686
Query 18268 AGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT 18327
|| ||||||||||| |||||||| || ||||||| | ||| ||||| || || ||
Sbjct 16408685 GGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCT---TTG 16408629
Query 18328 ATTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385
| | || || |||||||| ||||||||| ||| ||| || || |
Sbjct 16408628 A--GATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTC--ACAAGGAATGGTT 16408573
Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445
|| || ||| ||| | || |||| | |||||| ||||| ||||| ||||||| |
Sbjct 16408572 TCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGG 16408513
Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505
| | |||||| || || || || | || || || || || || | || || | | |
Sbjct 16408512 AGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGA 16408453
Query 18506 GCCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564
|| || | ||| |||| ||| ||||| | | |||||| ||| || ||
Sbjct 16408452 GCTTCTGAGAT-CTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCC 16408394
Query 18565 GTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAA---ATGTTTTTCATT-ATCCT 18620
||| | | ||||| || || | || | ||||||||| | ||| || || |
Sbjct 16408393 GTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAG 16408334
Query 18621 TGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAG 18680
|||| || | ||| || | |||| || ||||| |||||||| | |||||| || |
Sbjct 16408333 TGAG-TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGG 16408275
Query 18681 ATGATTCGGCCTGTTTGTACAT 18702
||| |||||| | ||||||||
Sbjct 16408274 ATGCTTCGGCTTTCTTGTACAT 16408253
Score = 109 bits (120), Expect = 8e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || ||||||| || || ||||| || || || || |||
Sbjct 772668 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 772609
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| ||| || || || || || ||||| || ||||| || ||
Sbjct 772608 GACACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAG 772549
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | ||||||||||||||| ||||| |||||| | | || || ||
Sbjct 772548 CAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAAC 772489
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| ||| |||| |||||||| ||| | | | ||||| |||
Sbjct 772488 AT-TCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGTCTCAGAGGTGGT 772441
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | ||||| ||||| || || | || || || |||
Sbjct 772440 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACAATCACCCTTGAGGTTGAGAGTTCA 772381
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| ||| || ||||||||||| || || ||||| || ||
Sbjct 772380 GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATTCCTCCGGATCAG 772321
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | |||||||||||||||||||||| | || | ||||||| |
Sbjct 772320 CAGAGGCTTATCTTTGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTGCAGATTACA-- 772263
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| ||| |||| |||||| | |||
Sbjct 772262 ACATCCAAAAGGAGTCGACACTTCATCTTGTG 772231
Score = 98.7 bits (108), Expect = 1e-15
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||| ||||| ||||| || || || ||| |||
Sbjct 6974235 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAAACCATTACCTTGGAGGTTGAAAGCTCT 6974176
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| || || || || || || ||||| || ||||| || ||
Sbjct 6974175 GACACTATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 6974116
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | |||| || ||||||||||| |||||| || ||| | | || || |
Sbjct 6974115 CAAAGACTTATTTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCTGACTACA-- 6974058
Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025
||||||||| ||| | || |||||
Sbjct 6974057 ATATCCAAAAGGAGTCTACTCTTCA 6974033
Score = 87.8 bits (96), Expect = 3e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | |||||| | ||||| || || || || | || || || |||
Sbjct 6974463 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTCT 6974404
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || || || || || || |||||||| ||||| || ||
Sbjct 6974403 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6974344
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | || ||||||||||| |||||| | | || || | ||||| ||
Sbjct 6974343 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACCTTGGCTGATTACAAC 6974284
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| | || || || || || | || |||||||| |||
Sbjct 6974283 ATCCAGAAAGAATCAACACTCCACTTGGTTCTCAGGTTAAGAGGTGGT 6974236
>seq1
Length=30427671
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||| || ||||| || || || || || ||| ||||
Sbjct 24277275 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 24277216
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || || ||| || || ||||| ||||| || ||||| || ||
Sbjct 24277215 GATACTATTGACAATGTTAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 24277156
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| || | || | ||||||||||||||| |||||
Sbjct 24277155 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGA 24277121
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876
|| |||||||| || || | ||||| | || || || || || || ||||| || |||
Sbjct 8314934 AAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAA 8314993
Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936
|| || | || || |||||| || || ||||| || ||||| || || ||
Sbjct 8314994 TCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCG 8315053
Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996
|| || ||| | ||||| | ||||| || || | |||||| ||||| || | |||
Sbjct 8315054 GATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGAT 8315113
Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| || || |||||| ||||||||||||| || || | | ||||| ||||
Sbjct 8315114 TACAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTG 8315168
Score = 86.0 bits (94), Expect = 9e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || | || || ||||| ||||| ||||||| || |||
Sbjct 20549761 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 20549820
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| |||| || || || || |||||||| || || ||||| |||
Sbjct 20549821 GATACAATCGATAACCTGAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCAA 20549880
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | ||| || ||||||||||||||| | ||| | ||||||| |
Sbjct 20549881 CAGAGACTCATCTTTGCAGGAAAGCAGCTCGAAGATGGTCGGACTCTTGCAGATTACA-- 20549938
Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025
| ||||||| ||| | || |||||
Sbjct 20549939 ACATCCAAAAGGAGTCAACACTTCA 20549963
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968
|| ||| || ||||| || ||||| || || ||||| || ||||| | ||| ||||||||
Sbjct 11218927 AAAACAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCA 11218868
Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTT 156028
||| |||||| ||||| ||| | ||||| || || ||||| |||| ||||| ||
Sbjct 11218867 GCTTGAAGATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTT 11218808
Query 156029 AGTGTTAAG 156037
|| || ||
Sbjct 11218807 GGTATTGAG 11218799
>seq4
Length=18585056
Score = 89.7 bits (98), Expect = 8e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||||||| ||||| || || || || || |||
Sbjct 1279208 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 1279149
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| || || || || ||||| || || || || || ||
Sbjct 1279148 GACACTATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 1279089
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||||| || || || |||||| |||||||| | || || ||
Sbjct 1279088 CAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTAGAACTTTGGCTGACTACAAC 1279029
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | || ||||| || |||||
Sbjct 1279028 ATTCAGAAGGAGTCTACACTTCACTTGGTGTT 1278997
Score = 89.7 bits (98), Expect = 8e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || ||||||| | || ||||| || ||||| | || || || |||
Sbjct 2588732 ATGCAGATTTTCGTTAAAACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGCTCT 2588673
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || |||||||| || || || ||||| || ||
Sbjct 2588672 GACACCATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCGGACCAG 2588613
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || || || ||||||||| | ||||| ||
Sbjct 2588612 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAGGACGGCAGAACTTTGGCGGATTACAAC 2588553
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | ||||||||||| || ||
Sbjct 2588552 ATCCAGAAGGAGTCTACGCTTCATTTGGTCTT 2588521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871935961200
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