Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 120 5e-22 seq5 118 2e-21 seq2 91.5 3e-13 >seq1 Length=30427671 Score = 120 bits (132), Expect = 5e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| || |||| || ||||| | || | |||||| || || ||||| | Sbjct 8315167 ACCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGC 8315108 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | | || ||||||||||| || || || || || | || || || ||||| Sbjct 8315107 TAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || ||| ||||| || || ||||| |||||||| Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 |||| || || || || || |||| ||||| | ||| ||||||||||| || Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 8314934 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||| | || | ||||| |||||| || || ||||| Sbjct 24276593 ATACCACCACGAAGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCA 24276652 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | | || || | |||||||||||||| || | |||||||||||| ||| Sbjct 24276653 GCCAAAGTCCTTCCATCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGT 24276712 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || | ||| ||||| || || ||| ||| |||||| || || ||||| || Sbjct 24276713 GGGATCCATTCCTTATCCTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCA 24276772 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| || || || || ||||| | || || ||||| Sbjct 24276773 ACCTCCAAGGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCAT 24276822 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||||| | || || | || || | |||||||| || || |||| |||| Sbjct 20549486 ATGTTGTAATCTGCAAGAGTGCGACCATCCTCAAGCTGTTTACCCGCGAATATTAGTCTC 20549427 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || |||||||| || ||||| || ||| ||| ||||| ||||| Sbjct 20549426 TGTTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTG 20549367 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 |||| || |||||||| |||||||||| ||| || | || || | |||||||||| Sbjct 20549366 TCTGTACTCTCAACTTCTAGGGTAATGGTTTAACCGGTAAGGGTCTTGACGAATATCTGC 20549307 Query 172068 AT 172069 || Sbjct 20549306 AT 20549305 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| ||||| | ||||| || || | ||| | ||||| ||| || | Sbjct 11218779 TCATAGTCCCACCCCTAAGCCTCAATACCAAGTGAAGAGTCGATTCTTTCTGAATGTTGT 11218838 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||| | || | || || | || ||||||||||| || || |||||||| | Sbjct 11218839 AATCCGCTAATGTTCTACCATCTTCAAGCTGCTTACCAGCAAATATCAACCTCTGTTGAT 11218898 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||||| ||||| || ||| || Sbjct 11218899 CAGGTGGTATTCCCTCTTTGTCCTGTTTT 11218927 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | || | ||| || || || ||||| Sbjct 24277046 ATACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 24277105 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || ||||| ||||| || | ||||| || || || Sbjct 24277106 GCGAGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGA 24277165 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || ||| || ||||| |||||||| || ||| Sbjct 24277166 GGGATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCA 24277225 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || || || || | || |||||||| Sbjct 24277226 ACCTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||||| | || || | || || | || || || ||||| || | |||| Sbjct 20549942 ATGTTGTAATCTGCAAGAGTCCGACCATCTTCGAGCTGCTTTCCTGCAAAGATGAGTCTC 20549883 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| || |||||||| || || || || || | ||| || ||| Sbjct 20549882 TGTTGGTCTGGTGGGATCCCTTCTTTGTCCTGAATCTTGGCCTTCAGGTTATCGATTGTA 20549823 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || |||||||| ||||||||||| || || | || || | ||| |||||| Sbjct 20549822 TCAGAGCTCTCAACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTCTTCACGAAAATCTGC 20549763 Query 172068 AT 172069 || Sbjct 20549762 AT 20549761 >seq5 Length=26975502 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || || | ||| | ||||| || || |||||| Sbjct 14953287 ATACCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCT 14953346 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | |||||||||||||| |||| ||||||||| || || Sbjct 14953347 GCAAGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGA 14953406 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || | |||||| || ||||| || ||| ||| ||||| ||||| ||||| || Sbjct 14953407 GGGACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 14953466 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||||||||||||| || | || || | ||||||||||| Sbjct 14953467 ACTTCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 100 bits (110), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 39116 ATATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 ||||| ||||| || ||||| || | ||||||||| || || || ||||| || Sbjct 16408805 ATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGA 16408746 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 |||||| | ||| |||||||| |||| || || | ||| ||||| || ||| |||| Sbjct 16408745 AAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 16408686 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT-TGCTCCAAACATTAATT 39294 || ||||||||||| || || || ||||| |||| ||||| | | || | || | Sbjct 16408685 GGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGA-- 16408628 Query 39295 TATCATCTAAAATCCAATTTATGGCCCAATCTGCTTTTTT 39334 ||| | ||||| || || ||||| ||||||||||| Sbjct 16408627 GATC--CGTTGATCCATTTCATAGCCCATTCTGCTTTTTT 16408590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || | ||| | ||| || || || ||||||| Sbjct 6973325 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 6973384 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || | || || ||||| || || | |||||||||||| ||||| Sbjct 6973385 AGAGTCCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGG 6973444 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || ||| || |||||| || || ||||| || || Sbjct 6973445 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACC 6973504 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||||||| || || | || || | ||||||||||| Sbjct 6973505 TCAAGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAATATCTGCAT 6973551 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | || | |||||| || || ||||| Sbjct 6973778 ATACCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 6973837 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || ||||| ||||| || | ||||| ||||| ||| Sbjct 6973838 GCAAGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGT 6973897 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || ||| ||| ||||| || || ||||| || Sbjct 6973898 GGGATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 6973957 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || |||||||| || | || || | || || ||||| Sbjct 6973958 ACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || | ||| | ||| || || || ||||||| Sbjct 771986 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 772045 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | ||||| ||||| || || | |||||||||||| ||||| Sbjct 772046 AGTGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 772105 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || ||| || |||||| || || ||||| ||| || Sbjct 772106 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTTTCAACC 772165 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || || | || || | || |||||||| Sbjct 772166 TCCAGAGTAATGGTCTTTCCGGTAAGGGTCTTCACAAAGATCTGCAT 772212 >seq2 Length=19698289 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | |||||||| || | | || | ||| | ||||| |||||| || || | Sbjct 14981533 TCATGGTTCCACCTCTGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGT 14981474 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||| | || | || |||||||| |||||||||||||| | |||||||| | Sbjct 14981473 AATCAGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGAT 14981414 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||||||||| || ||||| || || Sbjct 14981413 CAGGTGGTATGCCCTCTTTGTCCTG 14981389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135920800600