Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 131 5e-25 seq5 122 3e-22 seq1 100 8e-16 seq2 89.7 2e-12 >seq4 Length=18585056 Score = 131 bits (144), Expect = 5e-25 Identities = 235/340 (69%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || ||| |||||| || |||||| || |||||| ||| | || || | | Sbjct 16964224 TTTCTGACTGTCCCATCATACTTAACCATAATATCCTCCATAGCCTTTACCAATCGCCTC 16964283 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| || |||||| ||||| || ||||| |||||||| ||||| | || || ||| Sbjct 16964284 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCTCGTCCTCCC 16964343 Query 302659 ATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGA 302716 ||||||||||| || | ||||| | ||| |||| | | | | || ||||||| | Sbjct 16964344 ATAGCATGGAAAAAGAACTCTTGAGGAGTC-AAGCCACGC-AGGTACGAATTCTCAACAA 16964401 Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||||| || || || || ||||| || ||||||| |||| ||| Sbjct 16964402 AACCACGACTTTCAGGACCATAATCATCTTTGGTGAAATGTGGCAATGTCCGCCCATCAA 16964461 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||| || ||||| || ||||| || ||||| || | |||| |||| || | Sbjct 16964462 ATCCAAATGGAATTCGCTTCCCTTCAACATTTTGCTGACCGACACACGCTGTCATTTGAG 16964521 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||||| | ||| || ||||| || || | ||||| Sbjct 16964522 AAATATTGATGAAACTTCCTTTGGATCCTGCTGTCACCAT 16964561 >seq5 Length=26975502 Score = 122 bits (134), Expect = 3e-22 Identities = 274/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| ||||| || || || || || || || | ||| || ||| || Sbjct 4951638 AAACCCATCCATTTCGGTTAATATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTCC 4951697 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | | ||| || ||| | || | |||||||||||||| || |||||||| | Sbjct 4951698 TCCTATA----CCGGTTC-CTC-TCATTCTCCCAACAGCATCAATCTCATCAATGAACAC 4951751 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | ||| || ||||| | || | ||| || ||||| | | |||||||| | Sbjct 4951752 TATACAAGGTGAATTAGCCTTTGCCTTGTTAAACAAGTCTCTAGCTCTAGATGCTCCTAC 4951811 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTC 289178 ||||||| |||| |||| || || ||| | || | | || || | ||| ||||| Sbjct 4951812 ACCAACAAACATCTCTATGAACTCCGAACCAGACAATGAAAAAAAAGGAACACCGGCTTC 4951871 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || |||| ||| | |||| |||||||| || ||||| || ||||| || | || Sbjct 4951872 TCCGGCTATAGCCTTGGCCAAGAGTGTCTTTCCGGTTCCTGGCGGTCCGGTCAACAAGAC 4951931 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATA-TTTCTCAGGGCTCTTTAAAAATTCTA 289297 || ||||| | ||| ||||| || || | | |||||| ||| | || |||||||| | Sbjct 4951932 GCCTTTTGGGATTTTAGCCCCCAAAG-CTGAGAATTTCTCTGGGGTTTTCAAAAATTCAA 4951990 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || || |||| || | || || || || |||||||||||| Sbjct 4951991 CGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 4952036 Score = 114 bits (126), Expect = 4e-20 Identities = 283/421 (67%), Gaps = 20/421 (5%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || |||||||| ||||||||| ||| Sbjct 16903807 AAACCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACC 16903748 Query 288999 TCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATTTCGTCAATGAAA 289056 | || || | |||||| ||| | ||||||||||||||| || ||||| || Sbjct 16903747 ACC-----CATCCCA---GCTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAAC 16903696 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | ||| |||| || | |||| | ||||||| || || || | || || || Sbjct 16903695 ACAATACAAGGAGCTTTCGATTTCGCCTTCTCAAATAAATCCCTAACTCTAGAAGCACCC 16903636 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGC 289175 | ||||||| | | || ||||| || ||||| | | || || ||| | || || Sbjct 16903635 ACACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCACTCCAGC 16903577 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| || || || || || |||| ||| ||||| || || || ||||| || | || | Sbjct 16903576 TTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACCAACA- 16903518 Query 289236 AACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 ||| ||||| || | || || || |||| |||| || ||||| |||| || | Sbjct 16903517 AACAACCTTTAGGAATCTTAGCACCTAACGCAG---TATACTTATCAGGATTCTTCAAGA 16903461 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || |||| ||| | | ||| || || | |||| ||| || |||||| |||| | Sbjct 16903460 AATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCACCAAATG 16903401 Query 289352 T 289352 | Sbjct 16903400 T 16903400 >seq1 Length=30427671 Score = 100 bits (110), Expect = 8e-16 Identities = 305/468 (65%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| || | ||| | || | | | || ||| |||||| Sbjct 1961417 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCC 1961476 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | |||||||| || ||||| ||||||||||| ||||| || Sbjct 1961477 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 1961527 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| || | ||||| | || Sbjct 1961528 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 1961586 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||||| | | || || || | || | || | ||||| |||| ||| || Sbjct 1961587 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACACCGAC 1961646 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | ||| ||||| || || Sbjct 1961647 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCAGCTTCACCAGC 1961706 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | |||| || || || || || ||||| || || | | ||||| || || Sbjct 1961707 AATGGCTTTTGCCAACAGGGTTTTCCCGGTACCAGGAGGACCAACAAGAAGAACACCTTT 1961766 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 ||| | || ||| | | | | ||||||| |||| | ||| || || | ||| Sbjct 1961767 TGGGATCCGGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1961826 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || ||||| ||| || |||||| ||||||| Sbjct 1961827 CATGAAATCTTGCTTGGCTTCATCGACTCCAGCAACATCATCAAAAGT 1961874 Score = 96.9 bits (106), Expect = 1e-14 Identities = 280/418 (67%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| ||| || | ||||||| || ||||| || ||||||||| || Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 18615805 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || || || | |||||| | | |||| ||||| ||||| || |||||||| Sbjct 18615806 TCC-----CATCCCA---GCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAAT 18615857 Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| || | ||| | || || | | || || || || || | ||||| || Sbjct 18615858 ACAATACAAGGGGC-TTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACC 18615916 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 | ||| ||| | | ||||| || || || || | | || | ||| | || | Sbjct 18615917 CACACCCACAAAAAGCTCTACGAACTCCGAGGCCGCG-CAAGAGAAGAACGGCACTCCAG 18615975 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || || ||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 18615976 CTTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 18616034 Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291 ||| |||||| || | || || |||| || || | || || ||||| |||| || | Sbjct 18616035 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 18616092 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 | || |||| ||||| | || | || || | |||| || || ||||| ||||| Sbjct 18616093 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCCCCAGCAACATCTGCAAA 18616150 >seq2 Length=19698289 Score = 89.7 bits (98), Expect = 2e-12 Identities = 312/475 (66%), Gaps = 28/475 (6%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 || || ||||| || ||||| || | ||| | || | | | ||| ||| ||| |||| Sbjct 13175821 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 13175764 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||| | ||||| || || ||||| ||||||||||| ||||| Sbjct 13175763 CCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATT---ACCTC------ 13175713 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||| ||||| || | || | | Sbjct 13175712 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATG 13175654 Query 289063 CACGGAGAATT----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 || |||| || ||| || | ||| ||| | || | || | || || |||| Sbjct 13175653 CAAGGAGCGTTCTCCTTGGCTTTC--TTGAAAAGA--TCACGGACTCTCGAGGCACCAAC 13175598 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||| ||| |||| || ||||| |||||| | || | | || | ||| | ||| |||| Sbjct 13175597 ACCGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTT 13175539 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | || | |||| ||| || || || || ||||| || || | |||| Sbjct 13175538 CACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAA 13175479 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 | || || || | || || ||| | | | || ||||||| |||| ||||| || | Sbjct 13175478 CACCTTTCGGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCA 13175419 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 13175418 CCACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 13175364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817467996359