Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4 131 5e-25
seq5 122 3e-22
seq1 100 8e-16
seq2 89.7 2e-12
>seq4
Length=18585056
Score = 131 bits (144), Expect = 5e-25
Identities = 235/340 (69%), Gaps = 4/340 (1%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
||||| || ||| |||||| || |||||| || |||||| ||| | || || | |
Sbjct 16964224 TTTCTGACTGTCCCATCATACTTAACCATAATATCCTCCATAGCCTTTACCAATCGCCTC 16964283
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
||||| || |||||| ||||| || ||||| |||||||| ||||| | || || |||
Sbjct 16964284 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCTCGTCCTCCC 16964343
Query 302659 ATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGA 302716
||||||||||| || | ||||| | ||| |||| | | | | || ||||||| |
Sbjct 16964344 ATAGCATGGAAAAAGAACTCTTGAGGAGTC-AAGCCACGC-AGGTACGAATTCTCAACAA 16964401
Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776
||||||| || || || || ||||| || ||||||| |||| |||
Sbjct 16964402 AACCACGACTTTCAGGACCATAATCATCTTTGGTGAAATGTGGCAATGTCCGCCCATCAA 16964461
Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836
| || |||| || ||||| || ||||| || ||||| || | |||| |||| || |
Sbjct 16964462 ATCCAAATGGAATTCGCTTCCCTTCAACATTTTGCTGACCGACACACGCTGTCATTTGAG 16964521
Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876
||||||| | ||| || ||||| || || | |||||
Sbjct 16964522 AAATATTGATGAAACTTCCTTTGGATCCTGCTGTCACCAT 16964561
>seq5
Length=26975502
Score = 122 bits (134), Expect = 3e-22
Identities = 274/406 (67%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
||| |||||||| ||||| || || || || || || || | ||| || ||| ||
Sbjct 4951638 AAACCCATCCATTTCGGTTAATATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTCC 4951697
Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058
|| | | ||| || ||| | || | |||||||||||||| || |||||||| |
Sbjct 4951698 TCCTATA----CCGGTTC-CTC-TCATTCTCCCAACAGCATCAATCTCATCAATGAACAC 4951751
Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118
| ||| || ||||| | || | ||| || ||||| | | |||||||| |
Sbjct 4951752 TATACAAGGTGAATTAGCCTTTGCCTTGTTAAACAAGTCTCTAGCTCTAGATGCTCCTAC 4951811
Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTC 289178
||||||| |||| |||| || || ||| | || | | || || | ||| |||||
Sbjct 4951812 ACCAACAAACATCTCTATGAACTCCGAACCAGACAATGAAAAAAAAGGAACACCGGCTTC 4951871
Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238
|| |||| ||| | |||| |||||||| || ||||| || ||||| || | ||
Sbjct 4951872 TCCGGCTATAGCCTTGGCCAAGAGTGTCTTTCCGGTTCCTGGCGGTCCGGTCAACAAGAC 4951931
Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATA-TTTCTCAGGGCTCTTTAAAAATTCTA 289297
|| ||||| | ||| ||||| || || | | |||||| ||| | || |||||||| |
Sbjct 4951932 GCCTTTTGGGATTTTAGCCCCCAAAG-CTGAGAATTTCTCTGGGGTTTTCAAAAATTCAA 4951990
Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
| || || |||| || | || || || || ||||||||||||
Sbjct 4951991 CGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 4952036
Score = 114 bits (126), Expect = 4e-20
Identities = 283/421 (67%), Gaps = 20/421 (5%)
Strand=Plus/Minus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
||| |||||||| || |||| ||||||| || |||||||| ||||||||| |||
Sbjct 16903807 AAACCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACC 16903748
Query 288999 TCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATTTCGTCAATGAAA 289056
| || || | |||||| ||| | ||||||||||||||| || ||||| ||
Sbjct 16903747 ACC-----CATCCCA---GCTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAAC 16903696
Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116
| | ||| |||| || | |||| | ||||||| || || || | || || ||
Sbjct 16903695 ACAATACAAGGAGCTTTCGATTTCGCCTTCTCAAATAAATCCCTAACTCTAGAAGCACCC 16903636
Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGC 289175
| ||||||| | | || ||||| || ||||| | | || || ||| | || ||
Sbjct 16903635 ACACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCACTCCAGC 16903577
Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235
||| || || || || || |||| ||| ||||| || || || ||||| || | || |
Sbjct 16903576 TTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACCAACA- 16903518
Query 289236 AACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291
||| ||||| || | || || || |||| |||| || ||||| |||| || |
Sbjct 16903517 AACAACCTTTAGGAATCTTAGCACCTAACGCAG---TATACTTATCAGGATTCTTCAAGA 16903461
Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351
| || |||| ||| | | ||| || || | |||| ||| || |||||| |||| |
Sbjct 16903460 AATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCACCAAATG 16903401
Query 289352 T 289352
|
Sbjct 16903400 T 16903400
>seq1
Length=30427671
Score = 100 bits (110), Expect = 8e-16
Identities = 305/468 (65%), Gaps = 14/468 (3%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948
|| || |||||||| ||||| || | ||| | || | | | || ||| ||||||
Sbjct 1961417 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCC 1961476
Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008
|| || | | |||||||| || ||||| ||||||||||| ||||| ||
Sbjct 1961477 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 1961527
Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| | || | |||| ||| ||||||||||||| ||||| || | ||||| | ||
Sbjct 1961528 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 1961586
Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124
|||| ||||| | | || || || | || | || | ||||| |||| ||| ||
Sbjct 1961587 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACACCGAC 1961646
Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184
| |||| || ||||| |||||| | || | || ||| | ||| ||||| || ||
Sbjct 1961647 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCAGCTTCACCAGC 1961706
Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244
| || | |||| || || || || || ||||| || || | | ||||| || ||
Sbjct 1961707 AATGGCTTTTGCCAACAGGGTTTTCCCGGTACCAGGAGGACCAACAAGAAGAACACCTTT 1961766
Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304
||| | || ||| | | | | ||||||| |||| | ||| || || | |||
Sbjct 1961767 TGGGATCCGGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1961826
Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| | || | || || ||||| ||| || |||||| |||||||
Sbjct 1961827 CATGAAATCTTGCTTGGCTTCATCGACTCCAGCAACATCATCAAAAGT 1961874
Score = 96.9 bits (106), Expect = 1e-14
Identities = 280/418 (67%), Gaps = 20/418 (5%)
Strand=Plus/Plus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
|||||||||||| ||| || | ||||||| || ||||| || ||||||||| ||
Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 18615805
Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056
|| || || | |||||| | | |||| ||||| ||||| || ||||||||
Sbjct 18615806 TCC-----CATCCCA---GCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAAT 18615857
Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
| | ||| || | ||| | || || | | || || || || || | ||||| ||
Sbjct 18615858 ACAATACAAGGGGC-TTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACC 18615916
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174
| ||| ||| | | ||||| || || || || | | || | ||| | || |
Sbjct 18615917 CACACCCACAAAAAGCTCTACGAACTCCGAGGCCGCG-CAAGAGAAGAACGGCACTCCAG 18615975
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
|||| || || || ||||| ||||| ||||||||||| || ||||| ||||| | ||
Sbjct 18615976 CTTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 18616034
Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291
||| |||||| || | || || |||| || || | || || ||||| |||| || |
Sbjct 18616035 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 18616092
Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349
| || |||| ||||| | || | || || | |||| || || ||||| |||||
Sbjct 18616093 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCCCCAGCAACATCTGCAAA 18616150
>seq2
Length=19698289
Score = 89.7 bits (98), Expect = 2e-12
Identities = 312/475 (66%), Gaps = 28/475 (6%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946
|| || ||||| || ||||| || | ||| | || | | | ||| ||| ||| ||||
Sbjct 13175821 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 13175764
Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006
|||| |||| | ||||| || || ||||| ||||||||||| |||||
Sbjct 13175763 CCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATT---ACCTC------ 13175713
Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062
|| || | || | |||| ||| ||||||||||||| ||||| || | || | |
Sbjct 13175712 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATG 13175654
Query 289063 CACGGAGAATT----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118
|| |||| || ||| || | ||| ||| | || | || | || || ||||
Sbjct 13175653 CAAGGAGCGTTCTCCTTGGCTTTC--TTGAAAAGA--TCACGGACTCTCGAGGCACCAAC 13175598
Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177
||| ||| |||| || ||||| |||||| | || | | || | ||| | ||| ||||
Sbjct 13175597 ACCGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTT 13175539
Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237
| || || | || | |||| ||| || || || || ||||| || || | ||||
Sbjct 13175538 CACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAA 13175479
Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297
| || || || | || || ||| | | | || ||||||| |||| ||||| || |
Sbjct 13175478 CACCTTTCGGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCA 13175419
Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| | |||| | || | ||||| |||||| ||| || |||||| |||| ||
Sbjct 13175418 CCACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 13175364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817467996359
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