Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq7 655 0.0
seq2 293 3e-74
seq6 284 1e-71
seq1 122 1e-22
>seq7
Length=154478
Score = 655 bits (726), Expect = 0.0
Identities = 744/995 (75%), Gaps = 2/995 (0%)
Strand=Plus/Minus
Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897
||| ||| ||||| | || ||| | |||||||| || | || ||||| ||||| |
Sbjct 1397 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1338
Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957
|||||| || || | ||| | ||||| | || || | |||||||| ||||||||
Sbjct 1337 GATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278
Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017
|| || || || ||||| || |||||||| ||| |||| ||||| | ||||| |||||
Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218
Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077
|| || || ||||| || ||||| ||||| ||||| || |||| || || || ||
Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158
Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137
||||||||| || || | ||||||||||| |||||||| ||||||| |||| ||||
Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098
Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197
| ||||| | ||||| | | ||| |||||||||||||||||||| || |||
Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038
Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256
||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||||| ||
Sbjct 1037 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979
Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316
| || ||| | ||||||| | ||||| || ||| ||||||| ||||| || || |
Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919
Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376
| ||||| || ||||||| ||| |||| ||||| || |||||||||||||| |||||||
Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859
Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436
| || || ||| | ||||| |||||||| ||||| || || || || || ||||| |
Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799
Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496
|||| |||| |||||| || | | || ||||| ||||| || || || | |
Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556
|||||| ||||| ||||||||||| || |||||||| || || || |||||||| ||||
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616
| || | || |||||||| ||| ||||||||||| ||||| | || |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676
| || ||||| || || ||||| ||||| ||||| | ||| | || || ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736
|||| || |||||||| |||||||| || | | ||| |||| || || | || |
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499
Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796
| ||||| || || | |||||||| || ||||||||||||||||| || |||||||
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 151831
|||||||||||||||| ||||| ||||||| ||||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 641 bits (710), Expect = 4e-179
Identities = 752/1014 (74%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418
|||||| | ||||||||||| | ||| ||||| ||||||||||| |||||||||||
Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815
Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478
|| | || ||||| ||| ||| | ||| | || |||||| | || || || || ||
Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875
Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538
| || ||||||||||| || ||||| ||||||||| | || || || ||| |
Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935
Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598
|| || |||||||||||||| || || | | | |||||| | || | || ||||||
Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32995
Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658
||||| || ||||| ||||| | ||| ||| | || || || |||||||||||
Sbjct 32996 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 33055
Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717
|| |||||||| |||||||| |||| ||||| ||| | || || |||||||| || ||
Sbjct 33056 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33115
Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777
||| || | | || || || ||||| || || ||||||||||| || |||||||||||
Sbjct 33116 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGT 33174
Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837
| ||||| || || || || || |||||||| ||||||| || || || ||| ||
Sbjct 33175 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33234
Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897
|| || || || || |||||| | ||||| | ||||| || || || |||||||||||
Sbjct 33235 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33294
Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957
|| |||||||||||||| || || ||| | |||| | ||| |||| | || |||||
Sbjct 33295 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 33354
Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017
||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| ||
Sbjct 33355 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33414
Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077
||| || ||||||| ||||| || ||||| ||||| || |||||||| || |||||
Sbjct 33415 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33474
Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137
|| || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||
Sbjct 33475 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33534
Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197
||| || | ||| | |||| | || ||||| | | ||| | ||| | || || ||
Sbjct 33535 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACG 33594
Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257
||| || || || || || || |||||| | || | |||||||| ||||||||||| ||
Sbjct 33595 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 33654
Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317
|||||| || ||||| ||||| ||||||||| ||||||||||| |||| || || ||
Sbjct 33655 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33714
Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371
|||||||| ||| | | |||||||| ||||| | ||||| || ||||||||
Sbjct 33715 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768
>seq2
Length=19698289
Score = 293 bits (324), Expect = 3e-74
Identities = 357/487 (73%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 151346 TTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTC 151405
||||| || |||||||||||||| |||||||| || || ||| | ||||| ||||||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 151406 TTCGGTGGATCGCTCTTCTCGGCAATGCACGG-TTCTCTGGTTACTTCTTCGCTGGTTCG 151464
||||| || || || || || || || || ||| |||| |||||| || | |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524
|| |||| ||||| || || || | ||||||| ||||||||||||||| | ||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 151525 CTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTT 151584
|||||||| || || || || ||||| ||||| || | ||||||| | |
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835
Query 151585 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644
||||||||| ||||| | || |||||| | || || ||||| || || ||||| |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704
||||| | ||| | ||||| ||||| |||||||| || ||||| || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 151764
| | ||| |||| || || | || || ||||| || || | ||||||||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 151765 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 151824
| ||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 151825 TGCTGAG 151831
|| ||||
Sbjct 3331594 TGTTGAG 3331588
Score = 89.7 bits (98), Expect = 6e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052
||||||| ||||||||||||||||| ||||| || ||||||||| || |||||||
Sbjct 11758516 AAGATGATCAGTACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 11758457
Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111
| | || ||||| ||||| |||| || ||| |||||||| || | ||||| |||
Sbjct 11758456 GCAGAGCCGGTGCGTGTTCTACTTGCGCGGGTCAGATTGTGTCCGGCAACGTTGACCAG 11758398
>seq6
Length=366924
Score = 284 bits (314), Expect = 1e-71
Identities = 355/487 (73%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 151346 TTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTC 151405
||||| || |||||| |||||| |||||||| || || ||| | ||||| ||||||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 151406 TTCGGTGGATCGCTCTTCTCGGCAATGCACGG-TTCTCTGGTTACTTCTTCGCTGGTTCG 151464
||||| || || || || || || || || ||| |||| |||||| || | |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524
|| |||| ||||| || || || | ||||||| ||||||||||||||| | ||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 151525 CTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTT 151584
|||||||| || || || || ||||| ||||| || | ||||||| | |
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575
Query 151585 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644
||||||||| ||||| | || |||||| | || || ||||| || || ||||| |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704
||||| | ||| | ||||| ||||| |||||||| || ||||| || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 151764
| | ||| |||| || || | || || ||||| || || | ||||||||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 151765 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 151824
| ||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 151825 TGCTGAG 151831
|| ||||
Sbjct 334816 TGTTGAG 334822
>seq1
Length=30427671
Score = 122 bits (134), Expect = 1e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048
||||| || ||| ||| | | ||||||||||||||| ||| | ||| || |||
Sbjct 22444772 TGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTAC 22444831
Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108
||||| ||||||||| | ||||| ||||||||||| ||||| ||| | ||||||
Sbjct 22444832 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAT 22444891
Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168
||| |||||| ||| | |||||||| ||||||| ||| || || || || |||
Sbjct 22444892 CAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGT 22444951
Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195
| ||| || || || |||||||| |||
Sbjct 22444952 GCTGCTTACCCTACCTCTGATGTTACC 22444978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549622351908040
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