Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-29 seq5 111 2e-18 >seq3 Length=23459830 Score = 145 bits (160), Expect = 9e-29 Identities = 219/304 (72%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||| || || ||||||||||| ||||| || || | | |||| | |||| Sbjct 9980724 CCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTT 9980783 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||| || || || ||||| ||||| ||||| || |||| Sbjct 9980784 GAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCGA 9980843 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC-----ACCCA 869805 | ||||| |||||||| ||||| ||||| || || ||||| ||| ||| |||| Sbjct 9980844 AGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGA--GACTGTTTTCCCA 9980901 Query 869806 GTGGACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 || | | |||| | | | || || || || ||||||||||||| || || ||||| | Sbjct 9980902 GTCGCGGTTGTCTTGTGAT-AGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960 Query 869865 TTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGG 869922 |||||||||| ||||| | || ||||| | || ||||| | ||| || | || |||| Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGG 9981019 Query 869923 GTTG 869926 |||| Sbjct 9981020 GTTG 9981023 >seq5 Length=26975502 Score = 111 bits (122), Expect = 2e-18 Identities = 190/275 (69%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||| ||||| ||||| ||||| | | |||| | || Sbjct 16408497 GAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGA 16408438 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| | | || |||||| ||||| ||||| |||||||| Sbjct 16408437 ACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAG 16408378 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809 || || |||||||| || || ||||| || ||||||| | | || || |||||| | Sbjct 16408377 AAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCG 16408318 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| ||| || || || ||||| ||||||| || || ||||| || ||| Sbjct 16408317 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTCTTG 16408258 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||| | || |||| |||| ||||| Sbjct 16408257 TACATCTCCCAAATCTGTGGGTATTGGATTGGGAA 16408223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138625547219