Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 9e-29
seq5 111 2e-18
>seq3
Length=23459830
Score = 145 bits (160), Expect = 9e-29
Identities = 219/304 (72%), Gaps = 12/304 (4%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||||||||| || || ||||||||||| ||||| || || | | |||| | ||||
Sbjct 9980724 CCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTT 9980783
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| || || |||||| || || || ||||| ||||| ||||| || ||||
Sbjct 9980784 GAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCGA 9980843
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC-----ACCCA 869805
| ||||| |||||||| ||||| ||||| || || ||||| ||| ||| ||||
Sbjct 9980844 AGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGA--GACTGTTTTCCCA 9980901
Query 869806 GTGGACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
|| | | |||| | | | || || || || ||||||||||||| || || ||||| |
Sbjct 9980902 GTCGCGGTTGTCTTGTGAT-AGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960
Query 869865 TTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGG 869922
|||||||||| ||||| | || ||||| | || ||||| | ||| || | || ||||
Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGG 9981019
Query 869923 GTTG 869926
||||
Sbjct 9981020 GTTG 9981023
>seq5
Length=26975502
Score = 111 bits (122), Expect = 2e-18
Identities = 190/275 (69%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| || ||||| || ||||| ||||| ||||| ||||| | | |||| | ||
Sbjct 16408497 GAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGA 16408438
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| | | || |||||| ||||| ||||| ||||||||
Sbjct 16408437 ACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAG 16408378
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809
|| || |||||||| || || ||||| || ||||||| | | || || |||||| |
Sbjct 16408377 AAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCG 16408318
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|||| ||| || || || ||||| ||||||| || || ||||| || |||
Sbjct 16408317 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTCTTG 16408258
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||||||||||| | || |||| |||| |||||
Sbjct 16408257 TACATCTCCCAAATCTGTGGGTATTGGATTGGGAA 16408223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107138625547219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |