Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq1 107 2e-18 seq3 82.4 6e-11 >seq5 Length=26975502 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| || | ||||| |||||||||||| | ||| ||| | Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| ||||| ||||| ||||| || || ||||||| Sbjct 14953456 GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGATCAA 14953397 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| ||||||||||| || |||| | || | || ||||||||| Sbjct 14953396 CAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTACAAC 14953337 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | ||| |||| | || || |||| || Sbjct 14953336 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGG 14953290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 772903 ATTTCAGATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGA 772844 Query 110326 GC---CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 | ||||| || ||| | | || || |||||| ||||| |||||| | || Sbjct 772843 GAGCTCTGAC---ACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCC 772787 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 |||||| |||||| | || | || ||||||||||| || |||| | | || |||| Sbjct 772786 TCCGGATCAGCAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGC 772727 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 |||||||||||||| |||||||| || Sbjct 772726 CGATTACAACATTCAGAAAGAATCAAC 772700 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| ||| | || ||||| |||||||| | || ||| || Sbjct 772668 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 772609 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| ||||| ||||| ||||| | || |||| Sbjct 772608 GAC---ACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGAT 772552 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || |||||||| | ||| ||||| ||||| || || | ||||| | || || ||| Sbjct 772551 CAGCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTAC 772492 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || || | || ||||| Sbjct 772491 AACATTCAAAAGGAGTCGACCCTTCATTTGGTG 772459 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || |||||||| ||| | || ||||||||||||||| | || || || || Sbjct 6974235 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAAACCATTACCTTGGAGGTTGAAAGCTCT 6974176 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || ||||| ||||| ||||| | || ||| Sbjct 6974175 GAC---ACTATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGAC 6974119 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||||||||||| || ||||| ||||| || |||| || || | || || ||| Sbjct 6974118 CAGCAAAGACTTATTTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCTGACTAC 6974059 Query 110450 AACATTCAAAAAGAATCTAC 110469 || || ||||| || ||||| Sbjct 6974058 AATATCCAAAAGGAGTCTAC 6974039 >seq1 Length=30427671 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| ||||| || | ||||| ||||||||||| | ||| ||| | Sbjct 20549305 ATGCAGATATTCGTCAAGACCCTTACCGGTTAAACCATTACCCTAGAAGTTGAGAGTACA 20549364 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| ||||| ||||| ||||| | || ||||||| Sbjct 20549365 GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 20549424 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | |||||||||||||| ||||||| | || | || ||||||||| Sbjct 20549425 CAGAGACTAATATTCGCGGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTACAAC 20549484 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| | ||| | ||||| || || || Sbjct 20549485 ATCCAAAAGGAGTCAACACTTCACCTTGTGCTGAGACTCCGTGGTGG 20549531 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| || | || |||||||| || | || | ||| ||||| ||||| || Sbjct 11218920 GACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAA 11218861 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | ||||||||||||||||| |||||||| || | ||| |||| || Sbjct 11218860 GATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTG 11218801 Query 110486 AGACT 110490 || || Sbjct 11218800 AGGCT 11218796 >seq3 Length=23459830 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 110367 ACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGG 110426 |||| |||||| | || | || || ||| ||||||| | ||| ||||||||||| |||| Sbjct 3005906 ACAAGGAAGGCATTCCTTTAGACCAGCAACGACTTATCTTTGCTGGTAAACAGCTCGAGG 3005847 Query 110427 ATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAA 110486 ||| | || |||| ||||||||||| || ||||| || || | ||| |||| | | Sbjct 3005846 ATGGCCTTACCTTGGCTGATTACAACATCCAGAAAGAGTCAACTCTCCACTTGGTTCTGA 3005787 Query 110487 GACTGCGAGGGGG 110499 | || |||| || Sbjct 3005786 GGTTGAGAGGTGG 3005774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841564779451