Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-23 >seq5 Length=26975502 Score = 127 bits (140), Expect = 3e-23 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct 16408401 ACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCG 16408342 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | | || ||| |||||| | |||| ||| ||||| || ||||| ||| Sbjct 16408341 TTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTC 16408282 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || ||||| || ||||| || |||||||||||||| ||| || |||| |||| |||||| Sbjct 16408281 CAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAAC 16408222 Query 796378 AGAACAAAGCGAT-TGGGGTT 796397 | | || |||| ||| ||| Sbjct 16408221 ATACAGAATCGATCTGGTGTT 16408201 Score = 111 bits (122), Expect = 2e-18 Identities = 221/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | ||||||||||| ||| ||| || ||||| | || || || Sbjct 16408775 ACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTT 16408716 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| || || | ||| || || || ||||| || || || || ||| ||||| Sbjct 16408715 CTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAA 16408656 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| | ||| || ||| | || || ||||||||| ||||| ||||| Sbjct 16408655 CGCTACGATTCTCTCAGC-GAAGCTTTGAGATCC-----GTTGATCCATTTCATAGCCCA 16408602 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||||| |||||| |||| | || | || ||||| || ||||| || || || |||| Sbjct 16408601 TTCTGCTTTTTTCGTCAC--AAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTC 16408544 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| || ||||||| ||||| || |||| ||||| || || || Sbjct 16408543 TTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTC 16408484 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 || ||||| ||||| || || ||| Sbjct 16408483 AATCGCGATTTGGAATCCGTAGAAG 16408459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245655378073