Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq5 127 3e-23
>seq5
Length=26975502
Score = 127 bits (140), Expect = 3e-23
Identities = 150/201 (75%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
||||| ||||| |||||||| |||||||||||||| || || |||||||| ||||||
Sbjct 16408401 ACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCG 16408342
Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317
| | | || ||| |||||| | |||| ||| ||||| || ||||| |||
Sbjct 16408341 TTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTC 16408282
Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377
|| ||||| || ||||| || |||||||||||||| ||| || |||| |||| ||||||
Sbjct 16408281 CAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAAC 16408222
Query 796378 AGAACAAAGCGAT-TGGGGTT 796397
| | || |||| ||| |||
Sbjct 16408221 ATACAGAATCGATCTGGTGTT 16408201
Score = 111 bits (122), Expect = 2e-18
Identities = 221/325 (68%), Gaps = 8/325 (2%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||||||||| | ||||||||||| ||| ||| || ||||| | || || ||
Sbjct 16408775 ACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTT 16408716
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| | ||| || || | ||| || || || ||||| || || || || ||| |||||
Sbjct 16408715 CTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAA 16408656
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| |||| | ||| || ||| | || || ||||||||| ||||| |||||
Sbjct 16408655 CGCTACGATTCTCTCAGC-GAAGCTTTGAGATCC-----GTTGATCCATTTCATAGCCCA 16408602
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
||||| |||||| |||| | || | || ||||| || ||||| || || || ||||
Sbjct 16408601 TTCTGCTTTTTTCGTCAC--AAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTC 16408544
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
||| |||| || ||||||| ||||| || |||| ||||| || || ||
Sbjct 16408543 TTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTC 16408484
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
|| ||||| ||||| || || |||
Sbjct 16408483 AATCGCGATTTGGAATCCGTAGAAG 16408459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245655378073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |