Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq1 102 8e-17 seq4 82.4 7e-11 >seq5 Length=26975502 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | ||| ||||||| || |||||||| || |||||||||||| | Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| || |||||||| || | || | | ||||||||| ||||| Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| ||| || | | || | ||||| | | || || Sbjct 772790 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 772849 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 772850 TCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | ||| || || | ||| |||||||| || ||||||||||| | Sbjct 6974237 CCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCAGCC 6974296 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| || || |||||||| |||||| | |||||| || ||||| Sbjct 6974297 AAGGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGAGGA 6974356 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 6974357 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 6974416 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 6974417 TCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 ||||| || ||||| ||||||||||| | ||||| || | ||||| || ||||| || Sbjct 6973583 GTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCA-TCTTCAAGCTGTTTTCC 6973641 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| | || || | |||||||| || || || ||||| ||||| ||| ||| || Sbjct 6973642 AGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGAATCTTTGCCTT 6973701 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||||| | || || || | ||| | |||||||| || || || Sbjct 6973702 GACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCAGTTAAGGT 6973761 Query 137394 TTTTACGAATATTTGCATA 137412 || || || || |||||| Sbjct 6973762 CTTCACAAAAATCTGCATA 6973780 >seq1 Length=30427671 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 ||||||| | ||| | ||| ||||||| || || ||||| || ||||||||||| ||| Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| || ||||| | |||||| || || |||||| ||||||||||| || || Sbjct 8315106 -AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || ||| | | || | ||||||| | |||||| Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8314940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || | |||| ||||| ||||| || ||||||||||| | Sbjct 24276596 CCACCACGAAGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 24276655 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || ||||| |||||||||||| |||| || | || || || || || Sbjct 24276656 AAAGTCCTTCCATCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 24276715 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || | ||| || || ||| || ||| | | || | ||||||| | || || Sbjct 24276716 ATCCATTCCTTATCCTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCAACC 24276775 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||| ||||| || || ||||||||| Sbjct 24276776 TCCAAGGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCATA 24276823 >seq4 Length=18585056 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || ||||||| ||||| || || || ||||||||||| | Sbjct 2588506 CCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCC 2588565 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||| || ||||| || || || |||||| | ||||| || ||||| Sbjct 2588566 AAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 2588625 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || || || || | | || | ||||| | | || || Sbjct 2588626 ATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACC 2588685 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||| || || | ||||| ||||| || |||||| Sbjct 2588686 TCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCATA 2588733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543957252400