Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 156 1e-32 >seq5 Length=26975502 Score = 156 bits (172), Expect = 1e-32 Identities = 267/381 (70%), Gaps = 15/381 (4%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859 || ||||||||||||||||| |||||||| | | ||| | | || || || || Sbjct 16408590 AAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GAT--CTCAAAGCTTCGCTGAGAG 16408645 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918 | | ||||| |||||||| ||||||||||||||||| || ||| ||||| ||| | || | Sbjct 16408646 AATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGCTTT-TGTTCGATAT 16408704 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||| | ||||| || || || |||||||||||| | || || || |||| || |||| Sbjct 16408705 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCGA 16408764 Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----T 132034 |||| |||| | || ||| || ||| || || ||||| | | || | | Sbjct 16408765 GAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATATATAG----TCTTCTTAGAACT 16408820 Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094 || |||||||| || | | ||| || | | || || ||||| || |||| ||| Sbjct 16408821 AAGTTTGATGAAGATCGTTTGAAAGCGATTGTTTGTGATGCTGTTGAGATTGAGAGAGAG 16408880 Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154 ||| || || || | |||| ||| ||||||||||| ||| | |||| || Sbjct 16408881 TTTGTTTGTGACGCGCTTTCTTGTGCCTTGGTTGGGATGAATCGTGAGTTGATGAGTCAG 16408940 Query 132155 TACATTGAATTCGTTGCTGAT 132175 |||||||| |||||||||||| Sbjct 16408941 TACATTGAGTTCGTTGCTGAT 16408961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812693557727