Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 141 6e-29 seq3 111 1e-19 seq5 104 2e-17 seq2 91.5 1e-13 seq4 89.7 3e-13 >seq1 Length=30427671 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||||| |||||||| || || |||||| || ||||||||||| | Sbjct 8315168 CACCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAG 8315109 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||||| | | | || ||||||||||||||||| || ||||| || |||||||| | | Sbjct 8315108 CTAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTG 8315049 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| |||| |||| ||| | ||||| |||||| Sbjct 8315048 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCTGATGATTCT 8314990 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 8314989 ACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8314940 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| || ||| ||| ||||| ||||||||||| | Sbjct 24277048 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 24277107 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| |||| || | || || |||||||| || | | ||||||||| | || Sbjct 24277108 GAGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGG 24277167 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | | ||||| ||| | || || ||| | Sbjct 24277168 GATTCCTTCCTTATCCTGGATCTT-AGCCTTAACATTGTCAATAGTATCAGAACTTTCAA 24277226 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 24277227 CCTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCATA 24277276 >seq3 Length=23459830 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || |||||||| |||| Sbjct 23037366 CACCACCACGGAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGG 23037307 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || |||| || | ||||| ||||| |||||||| |||||||| || | | Sbjct 23037306 CGAGGGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTG 23037247 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| |||| ||| ||| | ||||||| |||||| Sbjct 23037246 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTCA-CATTGTCGATGGTGTCGGATGATTCA 23037188 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || |||| ||||| || ||||||||||| Sbjct 23037187 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 23037138 >seq5 Length=26975502 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||||||| || || ||||||||| ||||||||||| | Sbjct 6973780 ACCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGC 6973839 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || |||||||| || | | |||||| || | || Sbjct 6973840 AAGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGG 6973899 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || ||||| || || || | || |||| ||| | |||||| ||| | Sbjct 6973900 GATTCCCTCTTTATCTTGGATCTT-AGCTTTGACATTGTCAATGGTGTCTGAGCT---CT 6973955 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| |||||||| || | || || |||||||| |||||| Sbjct 6973956 CAACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || || ||| ||||| ||||||||||| | Sbjct 6973552 ACCACCACGGAGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGC 6973611 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||||| | || || | |||||||| ||||| || | | |||||||||| | || Sbjct 6973612 GAGTGTGCGTCCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGG 6973671 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | |||| || | ||||| ||| | Sbjct 6973672 AATCCCTTCCTTGTCTTGAATCTT-TGCCTTGACATTATCGATTGTGTCTGAGCT---CT 6973727 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || ||||| || || ||||| ||||||||| Sbjct 6973728 CAACCTCCAAAGTGATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCATA 6973780 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | | ||||| || ||||| ||||| || ||||||||||| | Sbjct 14953289 ACCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGC 14953348 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | ||||| | ||||| || ||||| || | | ||| ||||| | || Sbjct 14953349 AAGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGG 14953408 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 || ||||| ||||| || || | || ||||| ||| | ||||| ||| | Sbjct 14953409 GACTCCTTCCTTGTCTTGGATCTT-AGCTTTAACATTGTCAATAGTGTC---TGAACTCT 14953464 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || || |||||||| || | ||| || ||||| ||||||||| Sbjct 14953465 CAACTTCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | |||||||| || || ||||| || ||||||||||||| Sbjct 772669 ACCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGC 772728 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| ||||| || || || | |||||||| | || Sbjct 772729 CAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGG 772788 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | ||||| ||| | |||||| ||| | Sbjct 772789 AATGCCTTCCTTGTCCTGAATCTT-TGCCTTAACATTGTCGATGGTGTCAGAGCT---CT 772844 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 772845 CAACCTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || || ||| ||||| ||||||||||| | Sbjct 772213 ACCACCACGGAGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGC 772272 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || || | || || |||||||| || | | ||||||||| | || Sbjct 772273 AAGGGTGCGTCCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGG 772332 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | || ||||| || || || | || |||| ||| | |||||| ||| | Sbjct 772333 AATTCCCTCTTTATCTTGGATCTT-AGCTTTGACATTGTCAATGGTGTC---TGAACTCT 772388 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| |||||||| || | || || |||||||| |||||| Sbjct 772389 CAACCTCAAGGGTGATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCATA 772441 >seq2 Length=19698289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| | || ||| |||| || | || |||||||| ||| Sbjct 19344891 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 19344832 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| || | || | ||||| ||||| || || | | |||| Sbjct 19344831 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 19344773 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | |||||||| || || |||| ||||| || Sbjct 19344772 GTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCAC 19344713 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 19344712 GAAGATCTGCAT 19344701 >seq4 Length=18585056 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| || ||||| || || ||| ||| || || |||||||| |||| Sbjct 2719242 ACCTCCACGCAGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGC 2719183 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || | |||||||||||| || ||||| | |||||| || | || Sbjct 2719182 CAAAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 2719123 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| || || ||||| || | |||||| ||||| Sbjct 2719122 AATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCAC 2719063 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || ||||| || || || ||||||||| Sbjct 2719062 CTCCAAAGTGATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCATA 2719014 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| |||||||| || || || ||| || || |||||||| || | | || | | Sbjct 1278993 ACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTACC 1279052 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||||||||| || ||||| | |||||| || | || | ||| ||||| Sbjct 1279053 ATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCTTT 1279112 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCG 33709 ||| || || | || |||| ||| | ||||| ||| ||||| || | | Sbjct 1279113 GTCCTGGATCTT-GGCTTTGACATTGTCGATAGTGTCAGAGCT---CTCCACCTCCAAAG 1279168 Query 33710 TGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || || ||||| || ||||||||||||||| Sbjct 1279169 TGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCATA 1279209 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| |||||||| || || || ||| || || ||||||||||| | Sbjct 2719698 ACCTCCACGCAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 2719639 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||||||||||||||||||| ||||| | |||||| || | || Sbjct 2719638 CAAAGTACGACCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 2719579 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || || || ||| || | ||| | |||||| ||| | Sbjct 2719578 GATTCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCAGAGCT---CT 2719523 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || || | || || || |||||||||||| Sbjct 2719522 CTACCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATA 2719470 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| ||| || || |||||||| |||| Sbjct 2719926 ACCACCACGAAGACGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGC 2719867 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || || | || ||||| || || || | ||||||||| || | || Sbjct 2719866 CAAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 2719807 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || | | | |||| ||||||| ||||| Sbjct 2719806 AATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCA 2719748 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 2719747 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 2719698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703971957440