Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq7 605 8e-169 seq2 295 2e-75 seq6 286 1e-72 >seq7 Length=154478 Score = 605 bits (670), Expect = 8e-169 Identities = 730/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||||||||||| |||| |||||||| ||||||| Sbjct 1391 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1332 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| ||||||||||| ||||| |||| Sbjct 1331 CCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 1273 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 1272 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 1213 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || ||| | || || |||||||| || Sbjct 1212 TTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTG 1155 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 1154 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCT 1095 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 1094 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1035 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 1034 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 975 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | |||| || |||||||||| || || || |||| ||||||| | || |||| Sbjct 974 -TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 916 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| | Sbjct 915 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 856 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || || || ||||| ||||| |||| Sbjct 855 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTT 796 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 795 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || |||||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || ||||| |||||||| ||| |||||||||| |||||| |||| |||||| | || Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || ||| ||||| || || Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 436 CACAACTTCCCTCTAGACCTAGC 414 >seq2 Length=19698289 Score = 295 bits (326), Expect = 2e-75 Identities = 369/504 (73%), Gaps = 13/504 (3%) Strand=Plus/Minus Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||||| | ||| ||| | ||||||| || || || |||||||| |||||||| Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| |||||||||||||| || || ||||| ||||| || || || Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973 Query 20105 TCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 | |||| || | || | ||| | | || || | ||| | ||| | || | || Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||||||| | || || ||||| ||||| ||||||||||| ||||| Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || |||||||||| |||||||||| |||||| |||| |||||| | || Sbjct 3331852 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 || |||||||| ||||| |||||||| |||| || || || || ||||| || || Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 || || ||||| || || ||||| || | | || | | || ||||| ||| |||| Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| ||| | || |||||||| | || | || || ||||||||||| ||||| Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 ||| |||||||| || ||||| || Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGC 3331598 >seq6 Length=366924 Score = 286 bits (316), Expect = 1e-72 Identities = 367/504 (73%), Gaps = 13/504 (3%) Strand=Plus/Plus Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||||| | ||| ||| | ||||||| || || || |||||| |||||||| Sbjct 334321 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| |||||||||||||| || || ||||| ||||| || || || Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437 Query 20105 TCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 | |||| || | || | ||| | | || || | ||| | ||| | || | || Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||||||| | || || ||||| ||||| ||||||||||| ||||| Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || |||||||||| |||||||||| |||||| |||| |||||| | || Sbjct 334558 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 || |||||||| ||||| |||||||| |||| || || || || ||||| || || Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 || || ||||| || || ||||| || | | || | | || ||||| ||| |||| Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| ||| | || |||||||| | || | || || ||||||||||| ||||| Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 ||| |||||||| || ||||| || Sbjct 334789 TCACAACTTCCCTCTAGACCTAGC 334812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828787628606