Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq7 605 8e-169
seq2 295 2e-75
seq6 286 1e-72
>seq7
Length=154478
Score = 605 bits (670), Expect = 8e-169
Identities = 730/983 (74%), Gaps = 10/983 (1%)
Strand=Plus/Minus
Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569
||||||| | ||| || | ||||||||||| |||| |||||||| |||||||
Sbjct 1391 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1332
Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628
|| | || ||| || | |||| || ||||| ||||||||||| ||||| ||||
Sbjct 1331 CCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 1273
Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688
| || |||||||| || || ||||| || || || |||||||| |||||||| || |
Sbjct 1272 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 1213
Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746
| || || ||| | |||| | | ||| || || ||| | || || |||||||| ||
Sbjct 1212 TTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTG 1155
Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806
||||||| || ||||||||||||| |||||||| || || | |||| | || |
Sbjct 1154 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCT 1095
Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866
||||| | |||| | | ||| ||||| || |||||||||||||| | || ||
Sbjct 1094 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1035
Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926
|| ||| | ||||||||| |||||| || || ||||| |||||||| || |||| ||
Sbjct 1034 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 975
Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985
||||| | |||| || |||||||||| || || || |||| ||||||| | || ||||
Sbjct 974 -TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 916
Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045
| ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| |
Sbjct 915 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 856
Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105
| |||||| | ||||| |||||||||||||| || || || || ||||| ||||| ||||
Sbjct 855 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTT 796
Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164
| |||| || | || | ||| | | || || || ||| | ||| | || | |||
Sbjct 795 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737
Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224
|||| || |||||||||||||| || || ||||| ||||| ||||| ||||| |||||
Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677
Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284
|| ||||| |||||||| ||| |||||||||| |||||| |||| |||||| | ||
Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617
Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344
|| |||||||| ||||| |||||||| |||| || || || ||| ||||| || ||
Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557
Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404
|| || |||||||| || ||||| || | | || | | || ||||| ||| |||||
Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497
Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464
|||||||| ||| | || |||||||| || || | || || ||||||||||| ||||||
Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437
Query 20465 CATAACTTCCCACTTGACCTTGC 20487
|| |||||||| || ||||| ||
Sbjct 436 CACAACTTCCCTCTAGACCTAGC 414
>seq2
Length=19698289
Score = 295 bits (326), Expect = 2e-75
Identities = 369/504 (73%), Gaps = 13/504 (3%)
Strand=Plus/Minus
Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044
|| ||||||| | ||| ||| | ||||||| || || || |||||||| ||||||||
Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033
Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104
|| |||||| | ||||| |||||||||||||| || || ||||| ||||| || || ||
Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973
Query 20105 TCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163
| |||| || | || | ||| | | || || | ||| | ||| | || | ||
Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913
Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223
||||| || || ||||||||| | || || ||||| ||||| ||||||||||| |||||
Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853
Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283
|| |||||||||| |||||||||| |||||| |||| |||||| | ||
Sbjct 3331852 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802
Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343
|| |||||||| ||||| |||||||| |||| || || || || ||||| || ||
Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742
Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403
|| || ||||| || || ||||| || | | || | | || ||||| ||| ||||
Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682
Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463
||||||||| ||| | || |||||||| | || | || || ||||||||||| |||||
Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622
Query 20464 TCATAACTTCCCACTTGACCTTGC 20487
||| |||||||| || ||||| ||
Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGC 3331598
>seq6
Length=366924
Score = 286 bits (316), Expect = 1e-72
Identities = 367/504 (73%), Gaps = 13/504 (3%)
Strand=Plus/Plus
Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044
|| ||||||| | ||| ||| | ||||||| || || || |||||| ||||||||
Sbjct 334321 TCCGGTACGTGCTTCTA-ATGAT--TATTCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377
Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104
|| |||||| | ||||| |||||||||||||| || || ||||| ||||| || || ||
Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437
Query 20105 TCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163
| |||| || | || | ||| | | || || | ||| | ||| | || | ||
Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497
Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223
||||| || || ||||||||| | || || ||||| ||||| ||||||||||| |||||
Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557
Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283
|| |||||||||| |||||||||| |||||| |||| |||||| | ||
Sbjct 334558 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608
Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343
|| |||||||| ||||| |||||||| |||| || || || || ||||| || ||
Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668
Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403
|| || ||||| || || ||||| || | | || | | || ||||| ||| ||||
Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728
Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463
||||||||| ||| | || |||||||| | || | || || ||||||||||| |||||
Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788
Query 20464 TCATAACTTCCCACTTGACCTTGC 20487
||| |||||||| || ||||| ||
Sbjct 334789 TCACAACTTCCCTCTAGACCTAGC 334812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148828787628606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |