Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq7 627 2e-175 seq2 315 2e-81 seq6 306 1e-78 >seq7 Length=154478 Score = 627 bits (694), Expect = 2e-175 Identities = 732/981 (75%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| |||| || || || ||||||||||| || || |||||||| || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | || ||| | || ||| | ||| ||||| || ||||||||||| || Sbjct 1336 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||||||||| |||||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | ||| || || ||| | || || |||||| Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCA 1160 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || ||||||||| || ||||||||||||| |||||||| || || | |||| | Sbjct 1159 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1100 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 1099 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1040 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 1039 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 980 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||||||| ||||||| || ||| || | ||||||| | || Sbjct 979 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 920 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| ||| |||||||||||||||| || ||||| || |||||| Sbjct 919 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 860 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | ||||| |||||||| |||||||| || || |||||||| ||||| Sbjct 859 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 800 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 799 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 741 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || |||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 740 AGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 681 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | |||||||| || || ||||||||| |||||| |||||||||| || Sbjct 680 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 621 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 || |||||||| || || || ||||||||| | || | || | || || ||||| || Sbjct 620 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 561 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||| | ||||| || || || ||||| || | |||| | | || ||||| ||| | Sbjct 560 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 501 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 |||||||||||| ||| | || ||||||||||| || | || || ||||| |||||||| Sbjct 500 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 441 Query 19680 TGCTCATAACTTCCCACTTGA 19700 |||||| |||||||| || || Sbjct 440 TGCTCACAACTTCCCTCTAGA 420 >seq2 Length=19698289 Score = 315 bits (348), Expect = 2e-81 Identities = 369/495 (75%), Gaps = 13/495 (3%) Strand=Plus/Minus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||||| | ||| ||| || |||||||||||| || ||||| || |||||||| || Sbjct 3332086 GGTACGTGCTTCTA-ATGATT--ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTT 3332030 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | ||||| |||||||| |||||||| || ||||||||||| || || || | Sbjct 3332029 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTC 3331970 Query 19327 CTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | ||| | | ||||| | ||| | | |||| || | || || Sbjct 3331969 CTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTA 3331910 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || || || ||||||||| | ||||| |||||||| ||||||||||| |||||||| || Sbjct 3331909 CAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCG 3331850 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || |||| || ||||||||| |||||| |||||||||| || || || Sbjct 3331849 ATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3331799 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 |||||| || || || ||||||||| | || | || | ||||| ||||| |||||| | Sbjct 3331798 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCT 3331739 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTG 19625 ||||| || || || ||||| || | |||| | | || ||||| ||| ||||||| Sbjct 3331738 AAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTG 3331679 Query 19626 GGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 |||||| ||| | || ||||||||| | || | || || ||||| |||||||||||||| Sbjct 3331678 GGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCA 3331619 Query 19686 TAACTTCCCACTTGA 19700 |||||||| || || Sbjct 3331618 CAACTTCCCTCTAGA 3331604 >seq6 Length=366924 Score = 306 bits (338), Expect = 1e-78 Identities = 367/495 (74%), Gaps = 13/495 (3%) Strand=Plus/Plus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||||| | ||| ||| || |||||||||||| || ||| || |||||||| || Sbjct 334324 GGTACGTGCTTCTA-ATGATT--ATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTT 334380 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | ||||| |||||||| |||||||| || ||||||||||| || || || | Sbjct 334381 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTC 334440 Query 19327 CTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | ||| | | ||||| | ||| | | |||| || | || || Sbjct 334441 CTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTA 334500 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || || || ||||||||| | ||||| |||||||| ||||||||||| |||||||| || Sbjct 334501 CAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCG 334560 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || |||| || ||||||||| |||||| |||||||||| || || || Sbjct 334561 ATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 334611 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 |||||| || || || ||||||||| | || | || | ||||| ||||| |||||| | Sbjct 334612 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCT 334671 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTG 19625 ||||| || || || ||||| || | |||| | | || ||||| ||| ||||||| Sbjct 334672 AAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTG 334731 Query 19626 GGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 |||||| ||| | || ||||||||| | || | || || ||||| |||||||||||||| Sbjct 334732 GGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCA 334791 Query 19686 TAACTTCCCACTTGA 19700 |||||||| || || Sbjct 334792 CAACTTCCCTCTAGA 334806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148788267006