Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 seq4 89.7 5e-13 seq1 87.8 2e-12 >seq5 Length=26975502 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||||||||| | | |||| ||||| ||||||||||| ||| || |||||| Sbjct 772679 AAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGG 772738 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| | |||| | || ||||| ||||| |||||||| Sbjct 772739 CCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCC 772798 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| ||| || | | || | || || | ||| || |||| || Sbjct 772799 TTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 772858 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | ||| || ||||| Sbjct 772859 ATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 >seq4 Length=18585056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||||| ||| || Sbjct 1278772 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCA 1278831 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | |||| |||||||| || || ||||| || ||||| || || Sbjct 1278832 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1278891 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| ||| ||||| | || | || || Sbjct 1278892 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTAATGGTCTTT 1278951 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | |||||||||||| Sbjct 1278952 CCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 >seq1 Length=30427671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| || |||||||| || ||| | | | || |||||| |||| || || Sbjct 20550184 TTGACTCTTTCTGGATGTTGTAATCCGCTAAAG-TGCGACCATCTTCATGCTGCTTGCCT 20550126 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | |||| || | |||||| ||||| | || |||||||| || ||| ||| ||| Sbjct 20550125 GCAAAGATGAGTCTCTGTTGGTCTGGTGAAATCCCTTCTTTGTCCTGAATCTTTGCCTTC 20550066 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||||| | |||||||| | ||| | || || || |||| ||| Sbjct 20550065 ACATTGTCAATCGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTC 20550006 Query 132107 TTTATGAAAATCTGCAT 132123 |||| |||||||||||| Sbjct 20550005 TTTACGAAAATCTGCAT 20549989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| |||||||| || | || || |||||||||||| || || | Sbjct 20549956 TTGACTCCTTTTGGATGTTGTAATCTGCAAGAGTCCGACCATCTTCGAGCTGCTTTCCTG 20549897 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | |||||| ||||| || || |||||||| || ||| || |||| Sbjct 20549896 CAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCCTGAATCTTGGCCTTCA 20549837 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | ||| ||||| | || | ||||| || || || || | Sbjct 20549836 GGTTATCGATTGTATCAGAGCTCTCAACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTCT 20549777 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||||||||| Sbjct 20549776 TCACGAAAATCTGCAT 20549761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611158296520