Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 seq4 89.7 5e-13 >seq5 Length=26975502 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | || || || | ||||| |||| || || | Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTCT 772837 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| ||| || || || || || || || |||||| Sbjct 772836 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 772777 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| ||||| || ||||||| | | | ||||||||| Sbjct 772776 CAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 772717 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| |||||||| ||| ||||||| || | | || ||||| || Sbjct 772716 ATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGG 772670 >seq4 Length=18585056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | || || || | Sbjct 1279208 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 1279149 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| || || || ||||||||||| || || || ||| Sbjct 1279148 GACACTATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 1279089 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| |||||||| ||||||| ||||| | | || ||||| Sbjct 1279088 CAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTAGAACTTTGGCTGACTACAAC 1279029 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| || || || || |||| || ||||| Sbjct 1279028 ATTCAGAAGGAGTCTACACTTCACTTGGTGTT 1278997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | |||||||| | ||||| |||| || ||| | | Sbjct 2718559 ATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCC 2718618 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || ||||| ||||| || || || |||||| Sbjct 2718619 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 2718678 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || |||| || |||||| || || || |||| | | || || |||||||| Sbjct 2718679 CAGAGGCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGCCGTAC-GTTGGCTGATTACAA 2718737 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| || || ||||||||| | || || || Sbjct 2718738 TATCCAGAAGGAATCCACCCTCCACTTGGT 2718767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094361054240