Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-37 seq3 147 3e-29 >seq5 Length=26975502 Score = 174 bits (192), Expect = 2e-37 Identities = 358/527 (68%), Gaps = 13/527 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 16408221 TGTTCCCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 16408279 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869 ||||| ||||| || ||||| ||| |||| | |||||| || || | | Sbjct 16408280 TGGACAGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACC 16408339 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||||||| || || ||||| || |||||||||||| || |||||||| || || || Sbjct 16408340 AACGACGAACGTCACTTCATTAAACACGTCCTCGCC-TTCTTCGCCGCATCAGACGGAAT 16408398 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| |||||| || | | || ||| || || || | |||| || ||| Sbjct 16408399 CGTTCTCGAGAATCTCTCAACTAGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGC 16408458 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||| ||||| || || || || ||||| || | || ||||| | Sbjct 16408459 CTTCTACGGATTCCAAATCGCGATTGAGAATATTCACTCCGAGATGTATAGTCTCCTTCT 16408518 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 |||||| || |||| ||| |||| || || || ||||| || ||||| || | Sbjct 16408519 CGACACGTATATCAAAGACAACAAAGAGAGAGATCATCTTTTTCGTGCAATCGAAACCAT 16408578 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | |||| |||||| || || ||||| ||||| ||||||||| || ||| | Sbjct 16408579 TCCTT--GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAAC-----GGATCTCAA 16408631 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || ||| | |||| | ||||| |||| || || || || ||||| || || Sbjct 16408632 AGCTTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGC 16408691 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || || | || || ||| | ||||| || || | ||||| || || Sbjct 16408692 TTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 16408738 >seq3 Length=23459830 Score = 147 bits (162), Expect = 3e-29 Identities = 319/470 (68%), Gaps = 17/470 (4%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| |||||||||||| |||||| |||| || || || Sbjct 9981002 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAG-CCGAAGCATCATTC 9980944 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGT-----GTCGCTGA 1455867 ||||||||||| || || || || |||| | |||||| ||| | | Sbjct 9980943 TGGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAGTCTC--A 9980886 Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927 ||||| || || || |||||||| ||||||||||| ||| ||||| || || || Sbjct 9980885 ACGACGGTGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCTGCATCTGACGGA 9980827 Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987 ||||| ||||| || || ||||| ||| || || ||| | | ||||| ||| Sbjct 9980826 ATCGTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGT 9980767 Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || ||||| ||||||||||| || |||||||||||||| || | || ||||| Sbjct 9980766 GCTTTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTT 9980707 Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 |||| || || |||| || |||| || || |||||||| ||||| || || Sbjct 9980706 CTCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACA 9980647 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 | || | || || || || | ||||| ||||| |||||| || || ||| Sbjct 9980646 ATCCCTTGCGTCGCCAAGAAAGCTCAATGGGCTATGAAATGGATCGAC-----GGTTCTC 9980592 Query 1456168 GACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTT 1456215 | ||||| ||||| || || ||| || || ||||||| || | ||| Sbjct 9980591 -AGACTTTCGCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTACCTT 9980543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810524837134