Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 174 2e-37
seq3 147 3e-29
>seq5
Length=26975502
Score = 174 bits (192), Expect = 2e-37
Identities = 358/527 (68%), Gaps = 13/527 (2%)
Strand=Plus/Plus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || |||||
Sbjct 16408221 TGTTCCCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 16408279
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869
||||| ||||| || ||||| ||| |||| | |||||| || || | |
Sbjct 16408280 TGGACAGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACC 16408339
Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929
||||||| || || ||||| || |||||||||||| || |||||||| || || ||
Sbjct 16408340 AACGACGAACGTCACTTCATTAAACACGTCCTCGCC-TTCTTCGCCGCATCAGACGGAAT 16408398
Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989
||| |||||| || | | || ||| || || || | |||| || |||
Sbjct 16408399 CGTTCTCGAGAATCTCTCAACTAGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGC 16408458
Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049
|| ||||| ||||| ||||| || || || || ||||| || | || ||||| |
Sbjct 16408459 CTTCTACGGATTCCAAATCGCGATTGAGAATATTCACTCCGAGATGTATAGTCTCCTTCT 16408518
Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109
|||||| || |||| ||| |||| || || || ||||| || ||||| || |
Sbjct 16408519 CGACACGTATATCAAAGACAACAAAGAGAGAGATCATCTTTTTCGTGCAATCGAAACCAT 16408578
Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169
|| | |||| |||||| || || ||||| ||||| ||||||||| || ||| |
Sbjct 16408579 TCCTT--GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAAC-----GGATCTCAA 16408631
Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228
||| || ||| | |||| | ||||| |||| || || || || ||||| || ||
Sbjct 16408632 AGCTTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGC 16408691
Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| || | || || ||| | ||||| || || | ||||| || ||
Sbjct 16408692 TTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 16408738
>seq3
Length=23459830
Score = 147 bits (162), Expect = 3e-29
Identities = 319/470 (68%), Gaps = 17/470 (4%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | ||||| | ||| |||||||||||| |||||| |||| || || ||
Sbjct 9981002 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAG-CCGAAGCATCATTC 9980944
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGT-----GTCGCTGA 1455867
||||||||||| || || || || |||| | |||||| ||| | |
Sbjct 9980943 TGGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAGTCTC--A 9980886
Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927
||||| || || || |||||||| ||||||||||| ||| ||||| || || ||
Sbjct 9980885 ACGACGGTGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCTGCATCTGACGGA 9980827
Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987
||||| ||||| || || ||||| ||| || || ||| | | ||||| |||
Sbjct 9980826 ATCGTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGT 9980767
Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047
|| ||||| ||||||||||| || |||||||||||||| || | || |||||
Sbjct 9980766 GCTTTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTT 9980707
Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107
|||| || || |||| || |||| || || |||||||| ||||| || ||
Sbjct 9980706 CTCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACA 9980647
Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167
| || | || || || || | ||||| ||||| |||||| || || |||
Sbjct 9980646 ATCCCTTGCGTCGCCAAGAAAGCTCAATGGGCTATGAAATGGATCGAC-----GGTTCTC 9980592
Query 1456168 GACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTT 1456215
| ||||| ||||| || || ||| || || ||||||| || | |||
Sbjct 9980591 -AGACTTTCGCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTACCTT 9980543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177810524837134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |