Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq7 560 1e-154 seq2 251 9e-62 seq6 242 5e-59 seq1 91.5 2e-13 >seq7 Length=154478 Score = 560 bits (620), Expect = 1e-154 Identities = 722/994 (73%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||||| || |||| ||| | |||||||| Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || || || ||||| || |||| |||| || ||||| | || || || || || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 ||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||| | || Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | ||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||| || ||||| ||||||||| || ||||| || ||||| || |||| Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 ||| ||| | ||||||| | ||||| || ||| ||||| | ||||| || || || Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 ||||||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 || |||||||| ||||| || |||||||| || || || || || ||||| ||||| || Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| | || | || || || |||| ||| || || | || Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||||| ||||||||||| || |||||||| || || || |||||||| ||||| Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 || ||||| |||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||| ||||| || || ||||| || || | || | || || ||||| || || Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 ||| ||||| ||||| |||||||| || | | || | ||||||||||| | || || Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 498 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 497 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 438 Query 181940 GCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 181973 ||||||||||| || || || || || | |||| Sbjct 437 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 502 bits (556), Expect = 3e-137 Identities = 719/1007 (71%), Gaps = 8/1007 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 32766 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32825 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 32826 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32885 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | || ||||||| | |||||| || ||| | || || || | Sbjct 32886 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32945 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 32946 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33005 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || ||| ||| || |||||||||| Sbjct 33006 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 33065 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729 | || ||||| | || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 33066 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 33124 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||||||| |||||||| || || ||| ||| Sbjct 33125 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTC 33184 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 33185 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33244 Query 182850 ATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || | | |||| || |||| ||||||| || || |||||| | ||||| || Sbjct 33245 ATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTT 33301 Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966 |||||||||||||| || ||| ||||||| | || ||||| | ||||| ||||||| Sbjct 33302 CATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCT 33361 Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 33362 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 33421 Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086 | ||||| | || || || ||||| ||||| || || || || ||||||||||||||| Sbjct 33422 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATC 33481 Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146 || |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 33482 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTA 33541 Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206 | ||| | ||| | | || |||| | | || | ||| | || || ||||| ||| Sbjct 33542 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTAT 33601 Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266 || || || || || || | ||||| |||||||| || || ||||| ||||| || Sbjct 33602 GACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACT 33661 Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326 || || || ||| | || ||||| | ||||||||| |||| || ||||| || ||| Sbjct 33662 AAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCAT 33721 Query 183327 GAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||| | || |||||||| || |||||||| | || ||||| || Sbjct 33722 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768 >seq2 Length=19698289 Score = 251 bits (278), Expect = 9e-62 Identities = 348/487 (71%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||||| || |||||||||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGG-TTCTTTGGTTACATCTTCACTCGTCCG 181606 || || || || || || ||||| || || || ||| ||||| || ||| | || | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 181607 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666 || || | |||| ||| || || | ||||||| ||||| ||||||||| | || Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 181667 ATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATT 181726 |||||||| || || || || ||||| ||||| || |||||||||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 181727 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 181786 |||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 181787 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 181846 || || | || | ||||| ||||| || ||||| ||||| || || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 181847 TATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGG 181906 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 181907 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 181966 | || || ||||| ||||| || || || || ||||||||||| || || || || || Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 Query 181967 AGCTGAG 181973 | |||| Sbjct 3331594 TGTTGAG 3331588 >seq6 Length=366924 Score = 242 bits (268), Expect = 5e-59 Identities = 346/487 (71%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||||| || |||||| |||||| ||||| || || |||||||| ||||| || |||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGG-TTCTTTGGTTACATCTTCACTCGTCCG 181606 || || || || || || ||||| || || || ||| ||||| || ||| | || | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 181607 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666 || || | |||| ||| || || | ||||||| ||||| ||||||||| | || Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 181667 ATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATT 181726 |||||||| || || || || ||||| ||||| || |||||||||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 181727 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 181786 |||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 181787 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 181846 || || | || | ||||| ||||| || ||||| ||||| || || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 181847 TATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGG 181906 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 181907 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 181966 | || || ||||| ||||| || || || || ||||||||||| || || || || || Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Query 181967 AGCTGAG 181973 | |||| Sbjct 334816 TGTTGAG 334822 >seq1 Length=30427671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 179485 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 179544 ||||| |||||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 22444793 CTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 22444852 Query 179545 TCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTTTG 179604 || |||||||||||| | | | ||||||||||||||| || || || | Sbjct 22444853 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGTTTCCTT 22444912 Query 179605 GATGACGATCA-AATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTAC 179657 ||||| || || | ||| | ||| ||| |||| ||||| | |||| ||||| Sbjct 22444913 GATGATGAACAGATTGGTGAAGGG-TTTGTTCTCACTTGTGCTGCTTACCCTAC 22444965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614617546220960