Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq7 536 2e-147
seq2 233 3e-56
seq6 224 1e-53
>seq7
Length=154478
Score = 536 bits (594), Expect = 2e-147
Identities = 703/968 (73%), Gaps = 4/968 (0%)
Strand=Plus/Minus
Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554
|| ||||||||| | || ||||| |||||| | ||||| ||||| || || ||||||||
Sbjct 1369 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1310
Query 174555 GTATGTTTC-ATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613
| ||||| |||||||| ||| | | |||||| ||||| || || || || || |||||
Sbjct 1309 -TCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1251
Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673
||| || |||| || || | || |||||||| || || || ||||| || ||||||
Sbjct 1250 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 1191
Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733
||| || || || | || || ||||||||||||||||| || | | || |||||
Sbjct 1190 TTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATG 1131
Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793
||| |||||||| ||||||| ||||| |||| | ||||| | ||||| |
Sbjct 1130 GCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1071
Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853
|||||||| |||||||||||||| || ||| | |||||| | |||||||| |||
Sbjct 1070 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 1011
Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913
||||| || || || |||||||| || | || || ||| | ||||||| | |||||
Sbjct 1010 TGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCA 951
Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973
|| || || || | ||||| | || |||||||| || ||||||| ||| | ||
Sbjct 950 GGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 891
Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033
||||| || || || ||||| | |||||||| || |||||||| || || || |||||
Sbjct 890 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 831
Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCC 175092
||||| || || | || || ||||||||||| |||| || || | ||| ||
Sbjct 830 ATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCA 772
Query 175093 GTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGA 175152
| || || || |||| ||| || || | ||||||| ||||| ||||||||||| |
Sbjct 771 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAA 712
Query 175153 CCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212
| || ||||| || || || || || || || || || ||||| |||||||| ||| |
Sbjct 711 CTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTT 652
Query 175213 TCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGT 175272
||||||| || || || | || ||||||||||| || ||||| || || ||||| ||||
Sbjct 651 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 592
Query 175273 TCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGT 175332
| || || | ||| || || ||||| |||||||| ||||||||||| |||||||| |
Sbjct 591 TTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 532
Query 175333 CTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392
| || | || | ||||| | || | || || ||||| ||| || ||||| | |||
Sbjct 531 CAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 472
Query 175393 GTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAG 175452
||||| |||||||| |||||||| | ||||| ||||||||||| ||||| | || |
Sbjct 471 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 412
Query 175453 CAGCTGAG 175460
| | ||||
Sbjct 411 CTGTTGAG 404
Score = 457 bits (506), Expect = 1e-123
Identities = 706/1008 (70%), Gaps = 0/1008 (0%)
Strand=Plus/Plus
Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912
||||||| |||| |||||| | | || || | || | ||| | || |||||||| |
Sbjct 32758 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCT 32817
Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972
| | || |||| ||| ||| | || | || || ||| | || || ||||| |||||
Sbjct 32818 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 32877
Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032
|| ||||| || ||||| | || ||||||| | || ||| || ||| | ||
Sbjct 32878 AACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 32937
Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092
|| || || || ||||||||| || | | | |||||| | | |||| ||||||||
Sbjct 32938 CGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCC 32997
Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152
|||| | || || || || || ||| ||| | || || || ||| | ||||||||
Sbjct 32998 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGC 33057
Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212
||||||||| || ||||| | || || || ||| | ||||| |||||||| || ||
Sbjct 33058 TCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 33117
Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272
|| | || || || || || || |||||| |||||| || ||||| |||||
Sbjct 33118 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTC 33177
Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332
||| || || | || ||||||||||||||| ||||||||||| || ||||||||
Sbjct 33178 TGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 33237
Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392
|| || || ||| ||||| | | ||| | || || || || || |||||| |||||||
Sbjct 33238 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 33297
Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452
|| |||||||||||||| || ||| |||| || | || || |||| || || |||||
Sbjct 33298 ATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGG 33357
Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512
| |||||| |||||||| ||| ||||||||| || || || ||| ||| ||
Sbjct 33358 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 33417
Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572
| | || || | ||||| || ||||| ||||| || || |||||||| ||||| ||
Sbjct 33418 TAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACA 33477
Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632
|||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| ||
Sbjct 33478 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 33537
Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692
|| | ||| | ||| | | |||| | | || | ||| | || || |||||
Sbjct 33538 GGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGC 33597
Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752
||||| || || ||| || || | ||||| |||||||| || ||||| ||||||||
Sbjct 33598 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTA 33657
Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812
|| || || || ||| | |||||||| | | || |||||||| || ||||| ||
Sbjct 33658 TACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 33717
Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
||||| || ||||||| || || |||||||| | || |||||
Sbjct 33718 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33765
>seq2
Length=19698289
Score = 233 bits (258), Expect = 3e-56
Identities = 344/487 (71%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034
||||| || || || ||||| | |||||||| || |||||||| || || || |||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093
||||| || || | || || || ||||| | |||| || || | ||| || |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153
|| || | |||| ||| || || | ||||||| ||||| ||||||||| | ||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213
|| ||||| || || || ||||| || || || || |||||||||| | |
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835
Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273
|||||| || || || | || ||||||||||| || ||||| || || ||||| |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333
|| || | ||| || ||| ||||| |||||||| |||||||| || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393
|| | || | ||||| | || | || || ||||| ||| || ||||| | |||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453
|||| || ||||| |||||||| | ||||| ||||||||||| ||||| | || ||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 175454 AGCTGAG 175460
| ||||
Sbjct 3331594 TGTTGAG 3331588
>seq6
Length=366924
Score = 224 bits (248), Expect = 1e-53
Identities = 342/487 (70%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034
||||| || || || ||| | |||||||| || |||||||| || || || |||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093
||||| || || | || || || ||||| | |||| || || | ||| || |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153
|| || | |||| ||| || || | ||||||| ||||| ||||||||| | ||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213
|| ||||| || || || ||||| || || || || |||||||||| | |
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575
Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273
|||||| || || || | || ||||||||||| || ||||| || || ||||| |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333
|| || | ||| || ||| ||||| |||||||| |||||||| || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393
|| | || | ||||| | || | || || ||||| ||| || ||||| | |||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453
|||| || ||||| |||||||| | ||||| ||||||||||| ||||| | || ||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 175454 AGCTGAG 175460
| ||||
Sbjct 334816 TGTTGAG 334822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729929536131160
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