Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq7 536 2e-147 seq2 233 3e-56 seq6 224 1e-53 >seq7 Length=154478 Score = 536 bits (594), Expect = 2e-147 Identities = 703/968 (73%), Gaps = 4/968 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 1369 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1310 Query 174555 GTATGTTTC-ATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||||| |||||||| ||| | | |||||| ||||| || || || || || ||||| Sbjct 1309 -TCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1251 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | || |||||||| || || || ||||| || |||||| Sbjct 1250 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 1191 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || || | || || ||||||||||||||||| || | | || ||||| Sbjct 1190 TTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATG 1131 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 ||| |||||||| ||||||| ||||| |||| | ||||| | ||||| | Sbjct 1130 GCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1071 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 1070 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 1011 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| || | || || ||| | ||||||| | ||||| Sbjct 1010 TGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCA 951 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 || || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 950 GGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 891 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 890 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 831 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCC 175092 ||||| || || | || || ||||||||||| |||| || || | ||| || Sbjct 830 ATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCA 772 Query 175093 GTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGA 175152 | || || || |||| ||| || || | ||||||| ||||| ||||||||||| | Sbjct 771 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAA 712 Query 175153 CCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212 | || ||||| || || || || || || || || || ||||| |||||||| ||| | Sbjct 711 CTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTT 652 Query 175213 TCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGT 175272 ||||||| || || || | || ||||||||||| || ||||| || || ||||| |||| Sbjct 651 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 592 Query 175273 TCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGT 175332 | || || | ||| || || ||||| |||||||| ||||||||||| |||||||| | Sbjct 591 TTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 532 Query 175333 CTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392 | || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 531 CAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 472 Query 175393 GTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAG 175452 ||||| |||||||| |||||||| | ||||| ||||||||||| ||||| | || | Sbjct 471 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 412 Query 175453 CAGCTGAG 175460 | | |||| Sbjct 411 CTGTTGAG 404 Score = 457 bits (506), Expect = 1e-123 Identities = 706/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 32758 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCT 32817 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 32818 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 32877 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | || ||||||| | || ||| || ||| | || Sbjct 32878 AACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 32937 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || ||||||||| || | | | |||||| | | |||| |||||||| Sbjct 32938 CGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCC 32997 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 32998 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGC 33057 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||||||||| || ||||| | || || || ||| | ||||| |||||||| || || Sbjct 33058 TCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 33117 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || |||||| |||||| || ||||| ||||| Sbjct 33118 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTC 33177 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || ||||||||||||||| ||||||||||| || |||||||| Sbjct 33178 TGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 33237 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 || || || ||| ||||| | | ||| | || || || || || |||||| ||||||| Sbjct 33238 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 33297 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || |||||||||||||| || ||| |||| || | || || |||| || || ||||| Sbjct 33298 ATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGG 33357 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | |||||| |||||||| ||| ||||||||| || || || ||| ||| || Sbjct 33358 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 33417 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 33418 TAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACA 33477 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 33478 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 33537 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || | ||| | || || ||||| Sbjct 33538 GGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGC 33597 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || ||| || || | ||||| |||||||| || ||||| |||||||| Sbjct 33598 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTA 33657 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 || || || || ||| | |||||||| | | || |||||||| || ||||| || Sbjct 33658 TACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 33717 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 33718 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33765 >seq2 Length=19698289 Score = 233 bits (258), Expect = 3e-56 Identities = 344/487 (71%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| || || | || || || ||||| | |||| || || | ||| || | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || | |||| ||| || || | ||||||| ||||| ||||||||| | || Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || | ||| || ||| ||||| |||||||| |||||||| || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453 |||| || ||||| |||||||| | ||||| ||||||||||| ||||| | || || Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 Query 175454 AGCTGAG 175460 | |||| Sbjct 3331594 TGTTGAG 3331588 >seq6 Length=366924 Score = 224 bits (248), Expect = 1e-53 Identities = 342/487 (70%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||| | |||||||| || |||||||| || || || ||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| || || | || || || ||||| | |||| || || | ||| || | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || | |||| ||| || || | ||||||| ||||| ||||||||| | || Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || | ||| || ||| ||||| |||||||| |||||||| || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453 |||| || ||||| |||||||| | ||||| ||||||||||| ||||| | || || Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Query 175454 AGCTGAG 175460 | |||| Sbjct 334816 TGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929536131160