Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq7 554 5e-153
seq2 248 1e-60
seq6 239 5e-58
seq1 114 2e-20
>seq7
Length=154478
Score = 554 bits (614), Expect = 5e-153
Identities = 721/994 (73%), Gaps = 2/994 (0%)
Strand=Plus/Minus
Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908
||||| | ||| ||||| || | ||||| || || | || ||||| || || ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 177967
||||| || || | ||| | |||||| ||||||| || |||| ||| | ||||||||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278
Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218
Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087
|| || || ||||| || |||| |||| || ||||| | || || || || ||
Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158
Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147
||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||| | ||
Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098
Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207
| ||||| | ||||| | | || ||||| ||||||||||||||| | |||
Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038
Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267
| | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | ||
Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978
Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327
|| ||| || ||||||| | ||||| || |||||||| | ||||| || || ||
Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918
Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387
||||||||| ||||||| ||| |||| ||||| || || ||||||||||| ||||||||
Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858
Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447
|| |||||||| ||||| || ||||||||||| || || || || ||||| ||||| ||
Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798
Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507
||| ||||| || ||| | | | ||||| || |||| ||||| || | ||
Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738
Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567
||| | ||||| ||||||||||| || |||||||| || || || || || || || ||
Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678
Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627
|| ||||| |||||||||||| |||||||| || ||||| | || |||||| | ||
Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618
Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687
|| ||||| ||||| || || ||||| || || | || | || || ||||| || ||
Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558
Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747
||| ||||| ||||| |||||||| || | | || | ||||||||||| | || ||
Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 498
Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807
||||| || | | |||||||| || || |||||||| ||||| || || || ||
Sbjct 497 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 438
Query 178808 GCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 178841
||||||||||| || || || || || | ||||
Sbjct 437 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 477 bits (528), Expect = 1e-129
Identities = 708/1001 (71%), Gaps = 2/1001 (0%)
Strand=Plus/Plus
Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292
|||| |||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 32766 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32825
Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 32826 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32885
Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412
|||| || || || | || ||||||||| | || ||| || ||| | || || || |
Sbjct 32886 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32945
Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472
| || || |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32946 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33005
Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 33006 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 33065
Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGT 179591
| || ||||| | || ||||| ||| | | ||||||||||||||||| ||| | |
Sbjct 33066 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 33125
Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651
| ||||||| ||||| || || || |||||||| |||||||| || || ||| |||
Sbjct 33126 TGC-GACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTC 33184
Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711
|| || ||||| | || || || |||||| || ||||| |||||||| |||||
Sbjct 33185 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33244
Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771
|| || | ||| | || || | || || || || || ||||| | ||||| || |||
Sbjct 33245 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33304
Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831
||||||||||| || ||| |||| || | || ||||| | ||||| ||||| | ||||
Sbjct 33305 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 33364
Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891
||||| ||||| || | ||||||||| || |||||||| || || ||| | |
Sbjct 33365 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33424
Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951
|| || | ||||| |||||||| |||||||| || |||||||| ||||| || |||||
Sbjct 33425 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33484
Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011
|| |||| ||||| || || || ||| | ||||| || ||||| ||||| || || |
Sbjct 33485 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 33544
Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071
||| |||||| || |||| | | ||| | ||| | ||||| ||||| || ||
Sbjct 33545 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGAC 33604
Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131
||||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || ||
Sbjct 33605 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAA 33664
Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191
|| |||||| | || ||||| | ||||| ||| |||| | ||||| || |||||
Sbjct 33665 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33724
Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232
| ||||||| || || ||||| ||| | || || ||
Sbjct 33725 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33765
>seq2
Length=19698289
Score = 248 bits (274), Expect = 1e-60
Identities = 347/487 (71%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415
||||| || || ||||||||||| |||||||| || |||||||| ||||| || ||||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGG-TTCTTTGGTTACATCTTCACTCGTTCG 178474
||||| || || || || ||||| || || || ||| ||||| || ||| | | |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534
||||| | |||| ||||| || | ||||| | ||||| ||||||||| | ||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594
|||||||| || || || ||||| || || || || |||||||||| | |
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835
Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654
|||||| || ||||| | || |||||| | || || ||||| ||||| || || |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714
|| || | || | ||||| ||||| || ||||| ||||| || || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774
| | || | ||||| ||||| | || || ||||| || | | ||||||||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834
| || || ||||| ||||| || || || || ||||||||||| || || || || ||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 178835 AGCTGAG 178841
| ||||
Sbjct 3331594 TGTTGAG 3331588
Score = 86.0 bits (94), Expect = 8e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 180039 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCA 180098
|| ||||| ||||| ||||| ||||| || || ||||| ||||| ||| | ||||
Sbjct 3492728 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 3492669
Query 180099 GAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTT 180140
|||||||| || |||||||| ||||||||||| || |||||
Sbjct 3492668 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATCTTCTT 3492627
>seq6
Length=366924
Score = 239 bits (264), Expect = 5e-58
Identities = 345/487 (71%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415
||||| || || ||| |||||| |||||||| || |||||||| ||||| || ||||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGG-TTCTTTGGTTACATCTTCACTCGTTCG 178474
||||| || || || || ||||| || || || ||| ||||| || ||| | | |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534
||||| | |||| ||||| || | ||||| | ||||| ||||||||| | ||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594
|||||||| || || || ||||| || || || || |||||||||| | |
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575
Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654
|||||| || ||||| | || |||||| | || || ||||| ||||| || || |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714
|| || | || | ||||| ||||| || ||||| ||||| || || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774
| | || | ||||| ||||| | || || ||||| || | | ||||||||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834
| || || ||||| ||||| || || || || ||||||||||| || || || || ||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 178835 AGCTGAG 178841
| ||||
Sbjct 334816 TGTTGAG 334822
Score = 86.0 bits (94), Expect = 8e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 180039 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCA 180098
|| ||||| ||||| ||||| ||||| || || ||||| ||||| ||| | ||||
Sbjct 102176 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 102117
Query 180099 GAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTT 180140
|||||||| || |||||||| ||||||||||| || |||||
Sbjct 102116 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATCTTCTT 102075
>seq1
Length=30427671
Score = 114 bits (126), Expect = 2e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 176352 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 176411
||||| |||||||| ||||| || | ||| | ||||||||| ||||||||| |||||
Sbjct 22444793 CTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 22444852
Query 176412 TCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCCTG 176471
|| |||||||| ||| | | | ||| |||||||||||| ||| ||| ||||||
Sbjct 22444853 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGTTTCCTT 22444912
Query 176472 GATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524
|||||||| || |||| || ||| |||| ||||| | |||| |||||
Sbjct 22444913 GATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTACCCTAC 22444965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 606009546974160
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