Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq7 554 5e-153
seq2 264 1e-65
seq6 255 6e-63
seq1 98.7 1e-15
>seq7
Length=154478
Score = 554 bits (614), Expect = 5e-153
Identities = 723/995 (73%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438
||||| | ||| ||||| || | ||||| || || | || ||||| || || ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 158497
||||| || || | ||| | ||||| ||||||| || |||| ||| | ||||||||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278
Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218
Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617
|| || || ||||| || | || |||| || ||||| | || || || || ||
Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158
Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677
||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||| | ||
Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098
Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737
| ||||| | | || | | |||||||| ||||| ||||||||| | |||
Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038
Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797
| |||||||| || ||||| ||| |||||||| || || || || || || ||||
Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978
Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857
||| ||| | ||||||| | ||||| || ||| || |||| ||||||||| || ||
Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918
Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917
|||||||||||| |||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858
Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977
|| || ||| | ||||| ||||| |||||||| || || ||||| ||||||||||||
Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798
Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036
| || ||||| | | | || | ||||| || |||| || || || | |
Sbjct 797 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096
|||||| ||||| |||||||||||||| || || || || || || || ||||| || |
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156
| || ||||| |||||||| ||| |||||||| || ||||| || || |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216
| || ||||| || || || || ||||| || || | || | || ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276
|||| || |||||||| |||||||| || | ||||| |||| || ||||| | || |
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499
Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336
| ||||| ||| | | |||||||| || |||||||||||||||||||| ||||| |
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 159337 CACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 159371
| ||||||||||| || ||||| ||||||| ||||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 482 bits (534), Expect = 3e-131
Identities = 722/1020 (71%), Gaps = 4/1020 (0%)
Strand=Plus/Plus
Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815
Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018
|| | || |||| ||| ||| | ||| | || |||||| | || || ||||| ||
Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875
Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078
| ||| |||||||| |||||| | || ||||||||| | || ||| || ||| |
Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935
Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137
|| || ||||| ||||| ||| | | | | |||||| || || || || |||||
Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32994
Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197
|||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||
Sbjct 32995 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGT 33054
Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257
|| ||||| || || ||||| |||| || || ||| | ||||| |||||||| || ||
Sbjct 33055 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33114
Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316
||| || | | || ||||| ||||| || || ||||||||||| |||||||| ||||
Sbjct 33115 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTG 33173
Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376
| || ||||| || || ||| | ||||| || ||||||| || || || ||||
Sbjct 33174 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 33233
Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436
| || || || || ||| ||||| | | || | ||||| ||||| || ||||| | |
Sbjct 33234 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 33293
Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496
|||| || |||||||||||||| || ||| |||| || | || ||||| | || || |
Sbjct 33294 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTC 33353
Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556
|||| | ||||||||| || || | | ||||||||| || |||||||| || |
Sbjct 33354 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33413
Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616
| ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||
Sbjct 33414 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 33473
Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676
| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||
Sbjct 33474 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33533
Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736
| || || | ||| | |||| | |||| | | ||| | ||| | || || |
Sbjct 33534 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTAC 33593
Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796
|||| || || ||||| || || || | ||||| |||||||||||||||||||| |
Sbjct 33594 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTT 33653
Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856
|||| || || || || || | || ||||| | ||||| ||| | || || || |
Sbjct 33654 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 33713
Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916
| || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||||
Sbjct 33714 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33773
>seq2
Length=19698289
Score = 264 bits (292), Expect = 1e-65
Identities = 352/489 (72%), Gaps = 10/489 (2%)
Strand=Plus/Minus
Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943
||||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| |
Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008
Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003
||||||| || || || || |||||| ||||| || | || | || | | ||
Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948
Query 159004 -GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062
| ||||| | |||| || || || | ||||||| ||||| ||||||||| ||
Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888
Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122
|| || || || || || || |||||||| || || || |||||||||| |
Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 3331836
Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182
||||||| || ||||| || || |||||| | || || ||||| || || || || |||
Sbjct 3331835 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777
Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242
|| || || | || | || ||||| |||||||| || ||||| || ||||||||
Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717
Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302
|| | ||||| |||| || ||||| | || || ||||| ||| | | ||||||||
Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657
Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362
| ||||| |||||||||||||| ||||| || ||||||||||| || ||||| |||
Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597
Query 159363 GCTGCTGAG 159371
|||| ||||
Sbjct 3331596 GCTGTTGAG 3331588
>seq6
Length=366924
Score = 255 bits (282), Expect = 6e-63
Identities = 350/489 (72%), Gaps = 10/489 (2%)
Strand=Plus/Plus
Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943
||||||| || || ||| ||| ||||||||||| || || ||| | ||||| ||||| |
Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402
Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003
||||||| || || || || |||||| ||||| || | || | || | | ||
Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462
Query 159004 -GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062
| ||||| | |||| || || || | ||||||| ||||| ||||||||| ||
Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522
Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122
|| || || || || || || |||||||| || || || |||||||||| |
Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 334574
Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182
||||||| || ||||| || || |||||| | || || ||||| || || || || |||
Sbjct 334575 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633
Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242
|| || || | || | || ||||| |||||||| || ||||| || ||||||||
Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693
Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302
|| | ||||| |||| || ||||| | || || ||||| ||| | | ||||||||
Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753
Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362
| ||||| |||||||||||||| ||||| || ||||||||||| || ||||| |||
Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813
Query 159363 GCTGCTGAG 159371
|||| ||||
Sbjct 334814 GCTGTTGAG 334822
>seq1
Length=30427671
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 159546 TACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGT 159605
||| || | || |||||||||||||| || | ||| || || || || |||||||||
Sbjct 22444787 TACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 22444846
Query 159606 GCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCT 159665
||||| | ||||||||||| ||| | || | ||||| || |||||| |
Sbjct 22444847 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGT 22444906
Query 159666 TTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACA 159725
||| | || ||||| || | | |||||| ||| |||||||||||| | ||||||||
Sbjct 22444907 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTACCCTACC 22444966
Query 159726 TCAGACGTAACTAT 159739
|| || || || ||
Sbjct 22444967 TCTGATGTTACCAT 22444980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552473551658560
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