Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq7 554 5e-153 seq2 264 1e-65 seq6 255 6e-63 seq1 98.7 1e-15 >seq7 Length=154478 Score = 554 bits (614), Expect = 5e-153 Identities = 723/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||||| || |||| ||| | |||||||| Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || || || ||||| || | || |||| || ||||| | || || || || || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||| | || Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | ||||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || || || |||| Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | ||||||| | ||||| || ||| || |||| ||||||||| || || Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || || ||| | ||||| ||||| |||||||| || || ||||| |||||||||||| Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || ||||| | | | || | ||||| || |||| || || || | | Sbjct 797 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| |||||||||||||| || || || || || || || ||||| || | Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || ||||| |||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 | || ||||| || || || || ||||| || || | || | || ||||| |||| Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| || |||||||| |||||||| || | ||||| |||| || ||||| | || | Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | |||||||| || |||||||||||||||||||| ||||| | Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 159371 | ||||||||||| || ||||| ||||||| |||| Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 482 bits (534), Expect = 3e-131 Identities = 722/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | || ||||||||| | || ||| || ||| | Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32994 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 32995 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGT 33054 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 33055 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33114 Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 ||| || | | || ||||| ||||| || || ||||||||||| |||||||| |||| Sbjct 33115 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTG 33173 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | || ||||| || || ||| | ||||| || ||||||| || || || |||| Sbjct 33174 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 33233 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || || || || ||| ||||| | | || | ||||| ||||| || ||||| | | Sbjct 33234 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 33293 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || |||||||||||||| || ||| |||| || | || ||||| | || || | Sbjct 33294 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTC 33353 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 33354 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33413 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 33414 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 33473 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 33474 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33533 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||| | |||| | | ||| | ||| | || || | Sbjct 33534 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTAC 33593 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 |||| || || ||||| || || || | ||||| |||||||||||||||||||| | Sbjct 33594 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTT 33653 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || || || | || ||||| | ||||| ||| | || || || | Sbjct 33654 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 33713 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 33714 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33773 >seq2 Length=19698289 Score = 264 bits (292), Expect = 1e-65 Identities = 352/489 (72%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 ||||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 ||||||| || || || || |||||| ||||| || | || | || | | || Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 159004 -GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062 | ||||| | |||| || || || | ||||||| ||||| ||||||||| || Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || || || || || || || |||||||| || || || |||||||||| | Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 3331836 Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182 ||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 3331835 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 || || || | || | || ||||| |||||||| || ||||| || |||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302 || | ||||| |||| || ||||| | || || ||||| ||| | | |||||||| Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 | ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597 Query 159363 GCTGCTGAG 159371 |||| |||| Sbjct 3331596 GCTGTTGAG 3331588 >seq6 Length=366924 Score = 255 bits (282), Expect = 6e-63 Identities = 350/489 (72%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 ||||||| || || ||| ||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 ||||||| || || || || |||||| ||||| || | || | || | | || Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 159004 -GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062 | ||||| | |||| || || || | ||||||| ||||| ||||||||| || Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || || || || || || || |||||||| || || || |||||||||| | Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 334574 Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182 ||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 334575 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 || || || | || | || ||||| |||||||| || ||||| || |||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302 || | ||||| |||| || ||||| | || || ||||| ||| | | |||||||| Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 | ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813 Query 159363 GCTGCTGAG 159371 |||| |||| Sbjct 334814 GCTGTTGAG 334822 >seq1 Length=30427671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 159546 TACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGT 159605 ||| || | || |||||||||||||| || | ||| || || || || ||||||||| Sbjct 22444787 TACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 22444846 Query 159606 GCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCT 159665 ||||| | ||||||||||| ||| | || | ||||| || |||||| | Sbjct 22444847 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGT 22444906 Query 159666 TTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACA 159725 ||| | || ||||| || | | |||||| ||| |||||||||||| | |||||||| Sbjct 22444907 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTACCCTACC 22444966 Query 159726 TCAGACGTAACTAT 159739 || || || || || Sbjct 22444967 TCTGATGTTACCAT 22444980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552473551658560