Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq7 601 4e-167 seq2 271 9e-68 seq6 262 5e-65 >seq7 Length=154478 Score = 601 bits (666), Expect = 4e-167 Identities = 739/1004 (74%), Gaps = 4/1004 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTC-ATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||||| || | || ||| | || || || Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || || ||||| || | || | ||| || ||||| | || || ||||| || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||||||||| ||||| | ||||| ||||| || ||||| ||||||| |||| | || Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | ||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || ||||||| ||| Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | ||||||| | ||||| || ||| ||||||| ||||||||| || || Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | ||||| ||||| |||||||| || || ||||| ||||||||| || Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || ||||| | | ||| || | ||||| || || | || || || | | Sbjct 797 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||||||||| || || ||||| || || || || || || || | Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||| ||||||||||| || ||||| || || ||||| || |||||| | | Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 | || |||||||| || || || ||||| |||||| | || | || ||||| |||| Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| || |||||||| |||||||| || | |||| ||||||||||||| |||| | Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | |||||||||||||||||||| ||||| | Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCT 179862 | ||||||||||| || ||||| ||||||| |||| || || || Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCT 395 Score = 500 bits (554), Expect = 1e-136 Identities = 699/980 (71%), Gaps = 0/980 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 32786 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32845 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| || || || | || Sbjct 32846 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 32905 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| || ||| | || || || || || || |||||| | | Sbjct 32906 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 32965 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | |||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 32966 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 33025 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || || ||| ||| || ||||||||||| || ||||| |||| || Sbjct 33026 TGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 33085 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410 |||||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 33086 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATC 33145 Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470 |||||||||||||| || ||||| ||||| || || || || || ||||| ||||| Sbjct 33146 GCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAA 33205 Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530 || ||||||||||||| || |||||| ||||| || || ||| ||||| | |||||| Sbjct 33206 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 33265 Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 | || || || || || ||||| | ||||| || |||||||||||||| || ||| || Sbjct 33266 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 33325 Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650 || || | || |||||| || || ||||| | ||||| || || || | | |||| Sbjct 33326 CTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 33385 Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710 ||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 33386 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 33445 Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 33446 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 33505 Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || || Sbjct 33506 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 33565 Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890 || | | ||| | ||| | ||||| ||||| || || ||||| || || ||| | Sbjct 33566 GGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 33625 Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950 ||||| |||||||| || || ||||| ||||| || || || || || || || ||||| Sbjct 33626 GCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 33685 Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 33686 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 33745 Query 181011 GTTCTACCAAGAGGTAACGC 181030 ||||||||| | || ||||| Sbjct 33746 GTTCTACCACGTGGAAACGC 33765 >seq2 Length=19698289 Score = 271 bits (300), Expect = 9e-68 Identities = 359/498 (72%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 179366 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 179425 ||||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 179426 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC 179485 ||||||| || || || || |||||| || || || | || | || | ||| || Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 179486 -GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 179544 | ||||| | || | || || || | ||||| | ||||| ||||||||| | Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 179545 ACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || || ||||| || || || ||||| || || || || |||||||||| | Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 3331836 Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGG 179664 | ||||| || || ||||| || |||||| | || || |||||||| || || || ||| Sbjct 3331835 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 179665 TTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAG 179724 || |||||| | || | || ||||| |||||||| || ||||| || |||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 179725 TCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCA 179784 || | |||| ||||||| ||||| |||| || ||||| || | | |||||||| Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 179785 GGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 179844 || ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597 Query 179845 GCTGCTGAGTCTACACCT 179862 |||| |||| || || || Sbjct 3331596 GCTGTTGAGGCTCCATCT 3331579 >seq6 Length=366924 Score = 262 bits (290), Expect = 5e-65 Identities = 357/498 (72%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 179366 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 179425 ||||||| || || ||| ||| ||||||||||| || || ||| | ||||| ||||| | Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 179426 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC 179485 ||||||| || || || || |||||| || || || | || | || | ||| || Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 179486 -GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 179544 | ||||| | || | || || || | ||||| | ||||| ||||||||| | Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 179545 ACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || || ||||| || || || ||||| || || || || |||||||||| | Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 334574 Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGG 179664 | ||||| || || ||||| || |||||| | || || |||||||| || || || ||| Sbjct 334575 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 179665 TTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAG 179724 || |||||| | || | || ||||| |||||||| || ||||| || |||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 179725 TCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCA 179784 || | |||| ||||||| ||||| |||| || ||||| || | | |||||||| Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 179785 GGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 179844 || ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813 Query 179845 GCTGCTGAGTCTACACCT 179862 |||| |||| || || || Sbjct 334814 GCTGTTGAGGCTCCATCT 334831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329546596160