Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 217 2e-51 seq3 158 2e-33 seq2 120 4e-22 >seq5 Length=26975502 Score = 217 bits (240), Expect = 2e-51 Identities = 432/628 (69%), Gaps = 19/628 (3%) Strand=Plus/Minus Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 || || || ||||| ||||| || || || || ||||| ||| |||||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729 |||||||||||||||| ||| || || || | ||| ||||| | | |||||| | || || Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCGGA 16408683 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCA 39787 ||||| || ||||| || ||||| || || | |||||| || | ||| ||| Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCC 16408623 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | || ||||| ||| ||||| || ||||| ||| | ||||||| || ||||| || Sbjct 16408622 GT-TG-ATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATT 16408567 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 ||| ||| |||| || | | || | | ||||| | ||| || || | | |||||| Sbjct 16408566 GCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTA 16408507 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || || || || || |||||||| || || |||||||| || | ||||| Sbjct 16408506 TACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 16408447 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | || || || || || ||||| | | ||| || || ||||| || Sbjct 16408446 GAGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGAT 16408387 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGT--GTCAATTT 40083 ||||| || || || | || |||||||| || | ||| ||| ||| || | ||| Sbjct 16408386 GCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT 16408327 Query 40084 ATTCCAGTC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 | |||||| |||| |||| || | ||| |||||||| |||||||| || || || Sbjct 16408326 -TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGC 16408271 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || || || |||||||| | ||| || | | ||||| ||||| || ||| |||| Sbjct 16408270 TTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAATCG 16408211 Query 40201 ATTTGGATTTTTTGCAAGGATGGGTTCC 40228 || ||| || || ||||| |||||| Sbjct 16408210 ATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 158 bits (174), Expect = 2e-33 Identities = 286/416 (69%), Gaps = 3/416 (1%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| ||| ||||| | ||||||||| || ||||| |||||||| || ||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||||| || | | || | ||||||| | ||| ||||| | | ||||||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || ||||||||||||||||| ||||| || ||||| ||| | || |||| | | Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || || || | || | ||| || || ||||| ||| || || Sbjct 9980783 TGAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCG 9980842 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090 || || || | || ||||| || || | |||| || | || | | || | |||| Sbjct 9980843 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTTTTCCCAG 9980902 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | | |||| ||||| |||||||||||| || ||||| || || || || || ||| Sbjct 9980903 TCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTT 9980962 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||||| | ||| || | | || || ||||| || ||| ||||| | ||| Sbjct 9980963 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| |||||||| ||||||||||| ||||| ||||| |||| | ||| ||| | Sbjct 9980047 TTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCTTGAAGTGAAATAAGT 9980106 Query 39386 TCCATGAAATCAAACGGATTAGT 39408 ||||| |||| ||||||||||| Sbjct 9980107 TCCATCCAATCGAACGGATTAGT 9980129 >seq2 Length=19698289 Score = 120 bits (132), Expect = 4e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 |||||| |||| ||||||||||||| | |||||||| ||| ||| |||||||| | || Sbjct 9294817 CAGCATAGGAACAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGC 9294758 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 ||||||||| || || | ||| || || || || ||| || | |||||| Sbjct 9294757 ACGAATATTATGAACTGAAACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTC 9294698 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| | ||| |||||||| ||||| |||||||||||| ||||| | ||||| ||||| Sbjct 9294697 TTTGAGTGTTTCATATATGCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 9294638 Query 69972 A 69972 | Sbjct 9294637 A 9294637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || || || | ||||||||||| |||||||||||| | | ||| | || || Sbjct 9294517 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 9294458 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || | || || ||||| || || || || | || || | ||||| Sbjct 9294457 GTAGGTTTGGATCACGGAATCAATATCATCCTTGTGGATCCCAACAGCAACCCTCATCAG 9294398 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || | | | |||||| ||||| ||| | || || Sbjct 9294397 CATGTGTTGAGGCCTTTCAACAACAGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAAG 9294338 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||||||| ||||| || Sbjct 9294337 AGTTTTAAATCCAAAGTA 9294320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908739895480