Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 seq4 89.7 4e-13 >seq5 Length=26975502 Score = 131 bits (144), Expect = 1e-25 Identities = 260/379 (69%), Gaps = 16/379 (4%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || ||||| | ||||||| || || || || || ||||| || || || |||||| Sbjct 16408433 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATTGAGAATATT 16408492 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || ||||| ||||| || | || ||||| |||||||| | |||| || Sbjct 16408493 CACTCCGAGATGTATAGTCTCCTTCTCGACACGTATATCAAAGACAACAAAGAGAGAGAT 16408552 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | ||| ||| || ||||| | ||| | || ||| |||||||| ||||| | Sbjct 16408553 CATCTTTTTCGTGCAATCGAAACCATTCCTTGTGACGAAA---AAAGCAGAATGGGCTAT 16408609 Query 44095 TAAATGGATAAAT-----TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 |||||||| || ||||| | ||| | ||||| | || |||||||| Sbjct 16408610 GAAATGGATCAACGGATCTCAAA-GCTTCGCTGAGAGAA----TCGTAGCGTTTGCTTGC 16408664 Query 44150 GTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || ||||| || ||||| || || | | |||| | ||||| ||||| ||||||||||| Sbjct 16408665 GTTGAAGGTATATTCTTCTCCGGTAGCTTTTGTT-CGATATTCTGGTTGAAGAAACGAGG 16408723 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 ||| |||||||| | || |||||||| || || || | || ||||| | || || Sbjct 16408724 TTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCACTG 16408783 Query 44269 CGATTTTGCTTGCTTGTTA 44287 ||||| ||||| ||| || Sbjct 16408784 TGATTTCGCTTGTTTGATA 16408802 >seq4 Length=18585056 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | |||||| Sbjct 16511764 ATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGG 16511705 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 16511704 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 16511645 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 16511644 AAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGC 16511593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455966092035