Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5 131 1e-25
seq4 89.7 4e-13
>seq5
Length=26975502
Score = 131 bits (144), Expect = 1e-25
Identities = 260/379 (69%), Gaps = 16/379 (4%)
Strand=Plus/Plus
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| ||||| | ||||||| || || || || || ||||| || || || ||||||
Sbjct 16408433 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATTGAGAATATT 16408492
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || || ||||| ||||| || | || ||||| |||||||| | |||| ||
Sbjct 16408493 CACTCCGAGATGTATAGTCTCCTTCTCGACACGTATATCAAAGACAACAAAGAGAGAGAT 16408552
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCT 44094
| | ||| ||| || ||||| | ||| | || ||| |||||||| ||||| |
Sbjct 16408553 CATCTTTTTCGTGCAATCGAAACCATTCCTTGTGACGAAA---AAAGCAGAATGGGCTAT 16408609
Query 44095 TAAATGGATAAAT-----TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149
|||||||| || ||||| | ||| | ||||| | || ||||||||
Sbjct 16408610 GAAATGGATCAACGGATCTCAAA-GCTTCGCTGAGAGAA----TCGTAGCGTTTGCTTGC 16408664
Query 44150 GTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208
|| ||||| || ||||| || || | | |||| | ||||| ||||| |||||||||||
Sbjct 16408665 GTTGAAGGTATATTCTTCTCCGGTAGCTTTTGTT-CGATATTCTGGTTGAAGAAACGAGG 16408723
Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268
||| |||||||| | || |||||||| || || || | || ||||| | || ||
Sbjct 16408724 TTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCACTG 16408783
Query 44269 CGATTTTGCTTGCTTGTTA 44287
||||| ||||| ||| ||
Sbjct 16408784 TGATTTCGCTTGTTTGATA 16408802
>seq4
Length=18585056
Score = 89.7 bits (98), Expect = 4e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052
|||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||
Sbjct 16511764 ATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGG 16511705
Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112
|| | || || || || |||| |||||||| ||| ||||| ||||| |||||||
Sbjct 16511704 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 16511645
Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164
|| ||||||| | |||| || ||||| || || || ||||||||||| ||
Sbjct 16511644 AAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGC 16511593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455966092035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |