Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq4 100 2e-16 seq2 87.8 2e-12 seq1 87.8 2e-12 >seq5 Length=26975502 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||| || ||||| || | |||| | || || Sbjct 6973799 ACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGAGTGCGACCATCCTCT 6973858 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| |||||||| | || || | ||| || ||||| || | ||||||||||| | Sbjct 6973859 AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGG 6973918 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | ||||||| | ||||| || || || || | ||| Sbjct 6973919 ATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCAAGGGTGATTGTTTTA 6973978 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||||||| |||||||||||||||||| Sbjct 6973979 CCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || |||||||| |||||||| || ||| | ||||||| Sbjct 772460 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTC-CGTCTTC 772518 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| |||||||| | || || | ||| |||||||| || | || || || || Sbjct 772519 AAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTG 772578 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | | || | |||||| | | ||||| || | ||| || | || Sbjct 772579 GATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTCTT 772638 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| |||||||| || ||||||||||||||| Sbjct 772639 GCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || ||||| ||||| ||||| ||| || | | || | ||||| Sbjct 772688 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCT 772747 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||||||| | || | | || |||||||| || | || || || || Sbjct 772748 AGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 772807 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | ||||| || ||||| |||| ||| Sbjct 772808 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTCTTG 772867 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||||||||| Sbjct 772868 CCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||| || | | |||| | ||||||||||| |||||| Sbjct 772244 GTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGTCCATCTTCGAGCTGCTTACCG 772303 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| |||||||| || | ||||||||||| |||||| ||| Sbjct 772304 GCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCTTGGATCTTAGCTTTG 772363 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| ||||| || || || || | ||| || || || || Sbjct 772364 ACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGTGATTGTTTTACCAGTGAGGGTC 772423 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 772424 TTGACAAAGATTTGCATA 772441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| ||||||||||| | | | | ||||| ||||| ||||| Sbjct 6974039 GTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGCTTACCA 6974098 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| || | || || ||||| || | || || || || |||||| || Sbjct 6974099 GCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTG 6974158 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | |||||| || | || || | |||||| |||||||| Sbjct 6974159 ACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGTCAGAGTC 6974218 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 6974219 TTGACAAAGATCTGCATA 6974236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| | ||||| || | || || ||||| || || ||||| || Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||||||||| || | || || | |||||||||||| || Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 || || || || || |||||| ||| | | || | |||||||| |||||| Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || || || || || ||||| || |||||| Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517 >seq4 Length=18585056 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || ||||||||| || | || | || || Sbjct 1278772 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCA 1278831 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | ||||||||||| || ||||| || | ||| || || || | Sbjct 1278832 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1278891 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | |||||||| ||||| || | || Sbjct 1278892 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTAATGGTCTTT 1278951 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || ||||| ||||| || || |||||| || Sbjct 1278952 CCAGTGAGAGTCTTCACGAAAATCTGCATACCT 1278984 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | ||||| || || || || ||||||||| || | || | Sbjct 2719913 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCA 2719854 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| | ||||||||||| || ||||| || | ||| || || Sbjct 2719853 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTG 2719794 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| | | ||| ||||| || || || Sbjct 2719793 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCAAGGGTGATG 2719734 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || |||| ||| || || ||||| |||||| || Sbjct 2719733 GTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 2719695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || ||||||||| || | || | || || Sbjct 2588296 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCCTCA 2588355 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | || || || || | Sbjct 2588356 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 2588415 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | |||||||| ||||| || | || Sbjct 2588416 ATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATGGTCTTT 2588475 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || |||| ||| || || ||||| |||||| || Sbjct 2588476 CCGGTCAAAGTCTTTACGAAGATCTGCATACCT 2588508 >seq2 Length=19698289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||| ||| | | | || ||||||||||||| || || Sbjct 19344898 CGTTGATTCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCC 19344839 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| |||| | ||||| || ||||| || | || || || || ||||||| || Sbjct 19344838 GGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTT 19344779 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || || || || ||||| || | || ||||| || || Sbjct 19344778 GACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGT 19344719 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 19344718 TTTCACGAAGATCTGCAT 19344701 >seq1 Length=30427671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||| | || | ||||| ||||| || || ||||| || || | | | Sbjct 24276608 CGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTTCCA 24276667 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||||||||| || | ||||| | |||||| || || || | | || ||| Sbjct 24276668 TCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCATTCCTTA 24276727 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| ||| | | || | ||||||| | ||||| || | || || Sbjct 24276728 TCCTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATG 24276787 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| |||| |||||||||||||||||||||| Sbjct 24276788 GTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCATA 24276823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934363747784