Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq2 123 3e-23 seq5 107 2e-18 >seq1 Length=30427671 Score = 145 bits (160), Expect = 1e-29 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| || || | | || || || Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 1961438 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1961497 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| |||| | | |||| | || Sbjct 1961498 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 1961554 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | ||| ||||| ||||| |||||| ||| ||| || Sbjct 1961555 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 1961614 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 |||||||| |||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 1961615 AGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 1961674 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| || | ||||| || | Sbjct 1961675 --ATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCC 1961732 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| | ||||| | ||| |||||| ||||||| || Sbjct 1961733 CGGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCAGTGA 1961792 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 1961793 ACCTCTCAGGCTTCTTCAGAAACTCCAC 1961820 Score = 118 bits (130), Expect = 1e-21 Identities = 197/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| || Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 18615803 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | || || | ||| | ||| || ||||||||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||| | ||| || || | | ||| | ||| || ||| || || | ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | || | || ||||| ||||| |||||||| ||| Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 18616022 >seq2 Length=19698289 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| || | || ||||| | | ||||| Sbjct 13175827 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 13175768 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 13175767 CCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC---A 13175711 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 13175710 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCAA 13175651 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || ||||| || || || |||||| ||||| ||| Sbjct 13175650 GGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTCGAGGCACCAACACCGACA 13175591 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 13175590 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 13175531 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 |||||| || | ||||| || || ||||| || ||| ||||| | ||| Sbjct 13175530 ATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAACACCTTTC 13175471 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||||||||||| || ||||||| |||| ||| | ||| ||||| Sbjct 13175470 GGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCAC 13175418 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||||| |||||| || ||||| |||||||| || || | |||||| ||| || Sbjct 9296667 GTAGATGTTTGATGTGTAGGGCTCAAAACATTCATTGTTCCCAAGGATTTGACTGGTTGA 9296608 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT-GCGT- 110824 || |||||||||||||| | |||||| ||| | | || |||| ||||| | | Sbjct 9296607 AGCAGTTGGCATTGGTGCTACTAAAAGAGAGTTCCTCACTCCATTCT--TTGATATCATA 9296550 Query 110825 TCCTTGAGAACATCCCAGTC 110844 || | |||||| ||||||| Sbjct 9296549 TCTCTAAGAACAGCCCAGTC 9296530 >seq5 Length=26975502 Score = 107 bits (118), Expect = 2e-18 Identities = 261/389 (67%), Gaps = 20/389 (5%) Strand=Plus/Minus Query 11436 CCACTTGGATCTTGC-GATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCC 11494 ||||| || ||||| | ||||| | ||| || | || | ||| ||||| | |||| Sbjct 16903910 CCACTGTGA-CTTGCCGGTCAAATCTACCAGGTCTCAGCAACGCGGAGTCAAGAACATCC 16903852 Query 11495 ACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCAAAGCCATCCATC 11551 | ||||||||| || | ||||||| |||| | | ||| ||||||||| Sbjct 16903851 GGTCTATTAGTGGCAGCCAA---CACAATGACACCAGAGTTACCAGAAAACCCATCCATC 16903795 Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAG 11609 || || | | |||||||| || ||||| |||||||||||| | | ||| |||| Sbjct 16903794 TCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCC--ACCACCCATCCCAG 16903737 Query 11610 CACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG----TTGA 11665 | | | ||| | || || ||||||||||||||||| || |||||||| || || Sbjct 16903736 CTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAACACAATACAAGGAGCTTTCG 16903677 Query 11666 TTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATC 11725 |||| || | ||||| | ||| | ||| || ||||||||||||||||| | | Sbjct 16903676 ATTTC----GCCTTCTCAAATAAATCCCTAACTCTAGAAGCACCCACACCAACAAAAAGC 16903621 Query 11726 TCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCT 11785 || ||||| | | |||| ||| | ||| || || | ||| || || | ||| Sbjct 16903620 TCAACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTCTCCAGCCACAGCT 16903561 Query 11786 CGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | || ||||| |||||||| || Sbjct 16903560 CTAGCCAAAAGCGTCTTCCCCGTACCCGG 16903532 Score = 82.4 bits (90), Expect = 1e-10 Identities = 136/196 (69%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||| || |||| ||||| | ||| ||||| || || || ||||| | ||| Sbjct 16408781 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACC 16408722 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||||||||| | || | || || ||||||||||| ||||| || || || Sbjct 16408721 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCA 16408662 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 |||||||| | | | || |||||| |||| | | | | ||||||||| || Sbjct 16408661 AGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATAGC 16408605 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| || || ||| Sbjct 16408604 CCATTCTGCTTTTTTC 16408589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031945047200