Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq5 82.4 9e-11 seq3 82.4 9e-11 >seq1 Length=30427671 Score = 120 bits (132), Expect = 4e-22 Identities = 222/322 (69%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 1961465 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 1961524 Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 |||| || | | | |||| |||| || || || |||||||| | |||||| Sbjct 1961525 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 1961581 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 || ||||| |||||| ||| || || | ||| || || || ||||| ||| Sbjct 1961582 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACA 1961641 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | | | || | | |||||| || || ||| Sbjct 1961642 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCAGCTTC 1961700 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 ||| || |||||| || | ||||| ||||| || || || || | ||||| | Sbjct 1961701 ACCAGCAATGGCTTTTGCCAACAGGGTTTTCCCGGTACCAGGAGGACCAACAAGAAGAAC 1961760 Query 14446 ACCACGTGGGATCCTGGCACCA 14467 ||| |||||||| ||||||| Sbjct 1961761 ACCTTTTGGGATCCGGGCACCA 1961782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| || ||||| || || ||||| | |||||||| | Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCC--T 18615803 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| |||| || |||||||| ||||| ||||| || ||| Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | |||||| ||||| ||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||| | ||| || || | | ||| | || || ||| || || || ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | || ||||| ||||| ||||| || || Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGG 18616021 >seq5 Length=26975502 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||| ||||| | || || | ||| || || || || || ||||| | ||| Sbjct 16408781 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACC 16408722 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || |||||||||||||| |||| |||||| || |||||||| || || || || || Sbjct 16408721 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCA 16408662 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || ||||| | || | |||||| ||| Sbjct 16408661 AGCAAACGCTACGATTCTCTCAGCGAAG 16408634 >seq3 Length=23459830 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| |||||||| ||||| | ||| || ||||| | || |||||||| || Sbjct 9980352 GTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCC 9980411 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||||| |||||| || | |||||| || ||||||||||| || || ||||| Sbjct 9980412 TCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435145886920