Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 4e-22
seq5 82.4 9e-11
seq3 82.4 9e-11
>seq1
Length=30427671
Score = 120 bits (132), Expect = 4e-22
Identities = 222/322 (69%), Gaps = 8/322 (2%)
Strand=Plus/Plus
Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209
||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| |
Sbjct 1961465 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 1961524
Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266
|||| || | | | |||| |||| || || || |||||||| | ||||||
Sbjct 1961525 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 1961581
Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
|| ||||| |||||| ||| || || | ||| || || || ||||| |||
Sbjct 1961582 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACA 1961641
Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385
|| ||||||||||| ||||| | | | | | || | | |||||| || || |||
Sbjct 1961642 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCAGCTTC 1961700
Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445
||| || |||||| || | ||||| ||||| || || || || | ||||| |
Sbjct 1961701 ACCAGCAATGGCTTTTGCCAACAGGGTTTTCCCGGTACCAGGAGGACCAACAAGAAGAAC 1961760
Query 14446 ACCACGTGGGATCCTGGCACCA 14467
||| |||||||| |||||||
Sbjct 1961761 ACCTTTTGGGATCCGGGCACCA 1961782
Score = 89.7 bits (98), Expect = 6e-13
Identities = 190/279 (68%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||| ||||| || ||||| || || ||||| | |||||||| |
Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCC--T 18615803
Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | ||| || || | | ||| |||| || |||||||| ||||| ||||| || |||
Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863
Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || | ||| || || || || | ||| | |||||| ||||| |||||
Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922
Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388
|||||| | ||| || || | | ||| | || || ||| || || || ||| ||
Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982
Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| | || | || ||||| ||||| ||||| || ||
Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGG 18616021
>seq5
Length=26975502
Score = 82.4 bits (90), Expect = 9e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||| ||||| | || || | ||| || || || || || ||||| | |||
Sbjct 16408781 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACC 16408722
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| |||||||||||||| |||| |||||| || |||||||| || || || || ||
Sbjct 16408721 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCA 16408662
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|| ||||| | || | |||||| |||
Sbjct 16408661 AGCAAACGCTACGATTCTCTCAGCGAAG 16408634
>seq3
Length=23459830
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| | ||| |||||||| ||||| | ||| || ||||| | || |||||||| ||
Sbjct 9980352 GTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCC 9980411
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| ||||||| |||||| || | |||||| || ||||||||||| || || |||||
Sbjct 9980412 TCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618435145886920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |