Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq2 111 2e-19 seq5 105 8e-18 >seq1 Length=30427671 Score = 123 bits (136), Expect = 3e-23 Identities = 304/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 1961438 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1961497 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 1961498 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 1961554 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | ||| || |||||||| |||||| || || || Sbjct 1961555 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 1961614 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || || |||| || || ||||| ||||||||||| ||||| | | | | Sbjct 1961615 AGATCGCG--GACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG 1961672 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||| ||| || |||||| ||||||||| || | || || || Sbjct 1961673 -AGATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTC 1961731 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| | || || ||||| ||| ||| ||| ||| || | Sbjct 1961732 CCGGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCAGTG 1961791 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| ||||| ||||| | ||| Sbjct 1961792 AACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1961826 Score = 105 bits (116), Expect = 8e-18 Identities = 194/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| || || |||||||| ||||| | |||||||| || Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 18615803 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || || | ||| | ||| || || | ||||| || | | || |||||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||| | ||| || || | | ||| | || || ||| || || || ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || | || | || || || |||||||||||||| ||| Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 18616022 >seq2 Length=19698289 Score = 111 bits (122), Expect = 2e-19 Identities = 281/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | || ||| || | | |||||| Sbjct 13175827 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 13175768 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || || | || ||||| | ||||||||| || | Sbjct 13175767 CCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC---A 13175711 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || ||||| || ||||| | ||||| ||||| Sbjct 13175710 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCAA 13175651 Query 9734 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || || || || ||| ||| ||||| || || | | ||| || ||||| || Sbjct 13175650 GGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTCGAGGCACCAACACCGAC 13175592 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | || || | || ||| || ||| || |||||| | Sbjct 13175591 AAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAG 13175533 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||||||| || | ||| || || || ||||| || ||| || || ||||| Sbjct 13175532 CAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAACACCTT 13175473 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || |||||||| ||| || | |||||||||||| ||| | ||| ||||| | || Sbjct 13175472 TCGGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCACCACTT 13175413 Query 9972 C 9972 | Sbjct 13175412 C 13175412 >seq5 Length=26975502 Score = 105 bits (116), Expect = 8e-18 Identities = 256/378 (68%), Gaps = 16/378 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||||||| || |||||||| ||||||| |||||||| | Sbjct 16903807 AAACCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCC--A 16903750 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| ||||| | | ||| | || || ||||||||||||||||| || || || Sbjct 16903749 CCACCCATCCCAGCTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAACACAATA 16903690 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 16903689 CAAGG--AGCTTTCGATTTCGCCTTCTCAAATAAATCCC-TA-ACTCTAGAAGCACCCAC 16903634 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||| | ||| ||||| | | || | ||| | ||| || || || ||| Sbjct 16903633 ACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 16903574 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | |||| || | ||| ||||| |||||||| || ||| | | | Sbjct 16903573 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACCAACAAACA 16903514 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT--CTCTCAGGTTGCTTAAGAAAATCC 9964 |||| |||||||| || | || | ||||| | ||||| | ||| | ||||| Sbjct 16903513 ACCTTTAGGAATCTTAGCAC--CTAACGCAGTATACTTATCAGGATTCTTCAAGAAATCA 16903456 Query 9965 ACAATTTCTTCCAATTCA 9982 |||| ||||| || ||| Sbjct 16903455 ACAACTTCTTGTAACTCA 16903438 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 || ||| |||| |||| ||| |||| |||| || ||||||||||| ||| | Sbjct 16408565 GCAATCGAAACCATTCCTTGTGACGAAAA--AAGCAGAATGGGCTATGAAATGGAT---- 16408618 Query 94783 ACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCT 94840 ||| | || | ||| |||||| || || | || ||||| || ||||| ||||| | Sbjct 16408619 -CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATAT 16408677 Query 94841 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 94900 ||||||| ||| ||| || | || | ||| | ||||| |||||| | ||||| || | Sbjct 16408678 TCTTCTCCGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGAC 16408737 Query 94901 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || ||||| | || || | ||||| || || ||| Sbjct 16408738 TCACTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 16408781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260748964680