Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 147 1e-30 seq4 145 5e-30 seq1 134 9e-27 >seq5 Length=26975502 Score = 147 bits (162), Expect = 1e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| |||||||| || || || ||||| ||||||| ||| || || | || ||| Sbjct 14953308 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCATCGTCA 14953367 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || |||||||| ||||| |||| | |||||| ||||| || ||||| ||||||||| | Sbjct 14953368 AGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTGTCTTGG 14953427 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| | |||||| | ||| |||||| ||||| ||||| | ||| || ||||| Sbjct 14953428 ATCTTA-GCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAATGGTTTT 14953486 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| | ||| || ||||| |||||||| Sbjct 14953487 ACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||||||| || || ||||||||||||||| || || | | Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||||||||| || ||||||||||| || | | ||| || ||||| || Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| |||| |||| ||| ||| | ||| ||||| |||||| || Sbjct 772562 ATTCCTTCCTTGTCCTGGATC-TTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 772620 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || ||||| || ||||| Sbjct 772621 CTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| || ||||||||| ||||| ||||| | ||||| || Sbjct 6973562 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGT 6973621 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| ||||| || |||||||| | | ||| || || || || | || ||| Sbjct 6973622 CCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCC 6973681 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || || || ||||||||| |||||| || |||| || Sbjct 6973682 TTGTCTTGAATCTTT-GCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGT 6973740 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || ||||||||||||||||| Sbjct 6973741 GATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCAT 6973779 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||||||| || || ||| ||||| ||||| ||||| | | Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||||||||| || | | ||| |||||||| || Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| || ||| |||| || | ||| || | ||| |||||| |||||| || Sbjct 6973901 ATTCCCTCTTTATCTTGGATC-TTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 6973959 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | || |||||||| || ||||| Sbjct 6973960 CTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || ||||| ||||||| | Sbjct 6973325 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 6973384 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || || || || | | |||||||||||| || Sbjct 6973385 AGAGTCCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGG 6973444 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || || || |||||||||| |||||| || Sbjct 6973445 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAAC 6973503 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| ||||| | || |||||||| |||||||| Sbjct 6973504 CTCAAGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAATATCTGCAT 6973551 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||| || || ||||||||| ||||| ||||||| ||| || || Sbjct 772223 AGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGT 772282 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || ||||||||||| || | | ||| || ||||| || | |||||| Sbjct 772283 CCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCT 772342 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | ||| || | ||| |||||| ||||| || || | ||| Sbjct 772343 TTATCTTGGATC-TTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGT 772401 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || | || || ||||| || ||||| Sbjct 772402 GATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 772440 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||| | ||| || || |||||| || ||||| ||||| | | Sbjct 14953062 CCACCACAAAGACGCAGCACGAGATGAAGTGTTGACTCCTTCTGGATGTTGTAATCAGCA 14953121 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||| || ||||| || | | ||||||||| || || Sbjct 14953122 AGCGTCCGACCATCTTCGAGTTGTTTGCCTGCAAAGATAAGTCTCTGTTGGTCTGGTGGG 14953181 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAA-TTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||||| | || || || ||||||| |||||| || Sbjct 14953182 ATCCCTTCTTTGTCTTGTATCTTG-GCCTTCACATTATCGGTTGTGTCAGAGCTCTCAAC 14953240 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| ||||| | ||| | || | |||||||||||||| Sbjct 14953241 TTCCAAAGCTATGGTTTTTCGGGTAAGTGTCCTGACAAAAATCTGCAT 14953288 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| || || || || |||||||| ||||| | Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||||||||| |||||||| | || || ||||| || Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| |||| ||||| | || ||||| |||||| || Sbjct 772790 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | |||||||| || || ||||| Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 >seq4 Length=18585056 Score = 145 bits (160), Expect = 5e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| ||||| ||| |||||| |||||||| || || | | |||| Sbjct 2719232 AGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 2719173 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| ||||| || || || | ||| |||||||| || | ||||| Sbjct 2719172 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCT 2719113 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||| ||| || ||| ||||| |||||||| |||| || Sbjct 2719112 TTGTCTTGGATC-TTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGT 2719054 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || ||||| || || ||||||||||| Sbjct 2719053 GATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| || || |||||| || ||||| ||||| | | |||| Sbjct 2588515 AGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCCAAAGTTCTG 2588574 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| || ||||| || || || | ||| |||||||| || | |||||| Sbjct 2588575 CCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCC 2588634 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||| | || ||| | ||| ||||| ||||||||| || | || Sbjct 2588635 TTATCTTGGATCTTG-GCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGAGT 2588693 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||| ||||| || ||||||||||| Sbjct 2588694 AATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| |||||||| || || | | |||| Sbjct 1278991 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTA 1279050 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| ||||| || || || | ||| |||||||| || | ||||| Sbjct 1279051 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 1279110 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| || | || ||||| ||||||||| |||| || Sbjct 1279111 TTGTCCTGGATC-TTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGT 1279169 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || ||||| |||||||| Sbjct 1279170 GATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || ||| |||||| |||||||| || || | | |||| Sbjct 2719460 AGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTT 2719401 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || ||||| || || || | ||| |||||||| || | ||||| Sbjct 2719400 CCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 2719341 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| || ||| ||||| |||||||| |||| || Sbjct 2719340 TTGTCCTGGATC-TTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGT 2719282 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || ||||| || |||||||| Sbjct 2719281 GATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || ||||| ||||| | | || || Sbjct 2719688 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTACGA 2719629 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | |||||| |||||||| || || | ||| |||||||| || | ||| ||| Sbjct 2719628 CCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCC 2719569 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| ||||| |||||| || |||| || Sbjct 2719568 TTATCCTGGATC-TTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAAAGT 2719510 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || ||||| || |||||||| Sbjct 2719509 GATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| || || || |||||| || ||||| || || | | || || | || || Sbjct 1278771 CACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTC 1278830 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| ||||| || || || || | |||||| |||||||| || | || |||||||| Sbjct 1278831 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 1278890 Query 34617 GATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||||| | || ||| | ||| ||||| |||||| ||||| | || || || | Sbjct 1278891 GATCTTA-GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTAATGGTCT 1278949 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||| ||||||||||| Sbjct 1278950 TTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| |||||| || ||||| || || | ||| |||| | || || | || Sbjct 1279233 ATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTG 1279292 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || || | ||| |||||||| || | |||||||||||| |||| | Sbjct 1279293 CTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATC-T 1279351 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | || ||||| |||||||| || | || ||||| || || | Sbjct 1279352 TGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTTTCCCG 1279411 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || ||||||||||| Sbjct 1279412 TTAAGGTCTTGACGAAAATCTGCAT 1279436 >seq1 Length=30427671 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||||||| ||| ||||||||| ||||| ||||| | Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || |||||||||| || ||||||||||| || | | ||| || ||||| || Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || |||| || | ||||| | ||| || || || || || Sbjct 24277169 ATTCCTTCCTTATCCTGGATC-TTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAAC 24277227 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || || || || |||||||||||||| Sbjct 24277228 CTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||| | || || || ||||||||| ||||| ||||||| | Sbjct 20549987 CCACCACGAAGACGCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCA 20549928 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || | | ||||||||| || || Sbjct 20549927 AGAGTCCGACCATCTTCGAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 20549868 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||||| | || | | || ||||| || |||||| || Sbjct 20549867 ATCCCTTCTTTGTCCTGAATCTTG-GCCTTCAGGTTATCGATTGTATCAGAGCTCTCAAC 20549809 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| ||||| | || ||||| ||||||||||| Sbjct 20549808 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 20549761 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | ||||||||| || | || ||||| ||| || || ||||| ||||| | Sbjct 24276596 CCACCACGAAGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 24276655 Query 34538 AAAGTG-TTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| ||| | || || || |||||||| ||||| || | | ||||||||| || Sbjct 24276656 AAAGTCCTTC---CATCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGT 24276712 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTC 34655 || | | ||||| || ||||| | ||| || || |||||||||| |||||| Sbjct 24276713 GGGATCCATTCCTTATCCTGAATCTTA-GCTTTGACATTATCAATTGTGTCTGAGCTCTC 24276771 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| || || || || || || ||||||||||| || ||||| Sbjct 24276772 AACCTCCAAGGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCAT 24276822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | || || || |||||| || | ||| || | | Sbjct 24276824 CCACCACGAAGACGCAACACAAGGTGAAGCGTAGACTCCTTCTG---GATATTGTCAGCA 24276880 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || ||||| ||||| || || || || | | ||||||||| || || Sbjct 24276881 AGTGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 24276940 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| || || |||||| |||||| || Sbjct 24276941 ATACCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTATCGATGGTGTCTGAGCTCTCAAC 24276999 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || |||||||| |||||||| Sbjct 24277000 CTCCAAAGTGATTGTCTTTCCAGTGAGGGTCTTCACAAATATCTGCAT 24277047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729573149631