Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 1e-30
seq4 145 5e-30
seq1 134 9e-27
>seq5
Length=26975502
Score = 147 bits (162), Expect = 1e-30
Identities = 160/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| |||||||| || || || ||||| ||||||| ||| || || | || |||
Sbjct 14953308 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCATCGTCA 14953367
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| |||||||| ||||| |||| | |||||| ||||| || ||||| ||||||||| |
Sbjct 14953368 AGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTGTCTTGG 14953427
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| | |||||| | ||| |||||| ||||| ||||| | ||| || |||||
Sbjct 14953428 ATCTTA-GCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAATGGTTTT 14953486
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| | ||| || ||||| ||||||||
Sbjct 14953487 ACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||||||| || || ||||||||||||||| || || | |
Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| |||||||||| || ||||||||||| || | | ||| || ||||| ||
Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||| |||||||| |||| |||| ||| ||| | ||| ||||| |||||| ||
Sbjct 772562 ATTCCTTCCTTGTCCTGGATC-TTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 772620
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | || || ||||| || |||||
Sbjct 772621 CTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668
Score = 131 bits (144), Expect = 1e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | |||||| || ||||||||| ||||| ||||| | ||||| ||
Sbjct 6973562 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGT 6973621
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| |||||||| ||||| || |||||||| | | ||| || || || || | || |||
Sbjct 6973622 CCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCC 6973681
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||||| | || || || ||||||||| |||||| || |||| ||
Sbjct 6973682 TTGTCTTGAATCTTT-GCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGT 6973740
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || ||||| || |||||||||||||||||
Sbjct 6973741 GATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCAT 6973779
Score = 129 bits (142), Expect = 4e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||||||| || || ||| ||||| ||||| ||||| | |
Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || ||||||||||| || | | ||| |||||||| ||
Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||| || ||| |||| || | ||| || | ||| |||||| |||||| ||
Sbjct 6973901 ATTCCCTCTTTATCTTGGATC-TTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 6973959
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || |||||||| || | || |||||||| || |||||
Sbjct 6973960 CTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || ||||| |||||| || ||||| ||||||| |
Sbjct 6973325 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 6973384
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || ||||| || || || || || || | | |||||||||||| ||
Sbjct 6973385 AGAGTCCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGG 6973444
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| || | || || || |||||||||| |||||| ||
Sbjct 6973445 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAAC 6973503
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||| ||||| | || |||||||| ||||||||
Sbjct 6973504 CTCAAGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAATATCTGCAT 6973551
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | ||| || || ||||||||| ||||| ||||||| ||| || ||
Sbjct 772223 AGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGT 772282
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || ||||||||||| || | | ||| || ||||| || | ||||||
Sbjct 772283 CCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCT 772342
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| |||| || | ||| || | ||| |||||| ||||| || || | |||
Sbjct 772343 TTATCTTGGATC-TTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGT 772401
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||||||| || | || || ||||| || |||||
Sbjct 772402 GATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 772440
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||| | ||| || || |||||| || ||||| ||||| | |
Sbjct 14953062 CCACCACAAAGACGCAGCACGAGATGAAGTGTTGACTCCTTCTGGATGTTGTAATCAGCA 14953121
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| |||||||| || ||||| || | | ||||||||| || ||
Sbjct 14953122 AGCGTCCGACCATCTTCGAGTTGTTTGCCTGCAAAGATAAGTCTCTGTTGGTCTGGTGGG 14953181
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAA-TTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||||| | || || || ||||||| |||||| ||
Sbjct 14953182 ATCCCTTCTTTGTCTTGTATCTTG-GCCTTCACATTATCGGTTGTGTCAGAGCTCTCAAC 14953240
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| | ||| ||||| | ||| | || | ||||||||||||||
Sbjct 14953241 TTCCAAAGCTATGGTTTTTCGGGTAAGTGTCCTGACAAAAATCTGCAT 14953288
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||| | |||||||| || || || || |||||||| ||||| |
Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| || ||||||||||| |||||||| | || || ||||| ||
Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| |||| ||||| | || ||||| |||||| ||
Sbjct 772790 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || || || || || | |||||||| || || |||||
Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896
>seq4
Length=18585056
Score = 145 bits (160), Expect = 5e-30
Identities = 165/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| ||||| ||||| ||| |||||| |||||||| || || | | ||||
Sbjct 2719232 AGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 2719173
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| |||||||||||||| ||||| || || || | ||| |||||||| || | |||||
Sbjct 2719172 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCT 2719113
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | ||| ||| || ||| ||||| |||||||| |||| ||
Sbjct 2719112 TTGTCTTGGATC-TTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGT 2719054
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || ||||| || || |||||||||||
Sbjct 2719053 GATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015
Score = 127 bits (140), Expect = 1e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| |||||||| || || |||||| || ||||| ||||| | | ||||
Sbjct 2588515 AGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCCAAAGTTCTG 2588574
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| |||||||| || ||||| || || || | ||| |||||||| || | ||||||
Sbjct 2588575 CCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCC 2588634
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| |||||| | || ||| | ||| ||||| ||||||||| || | ||
Sbjct 2588635 TTATCTTGGATCTTG-GCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGAGT 2588693
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || |||| ||||| || |||||||||||
Sbjct 2588694 AATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || || |||||| |||||||| || || | | ||||
Sbjct 1278991 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTA 1279050
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| |||||||||||||| ||||| || || || | ||| |||||||| || | |||||
Sbjct 1279051 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 1279110
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||| || | || ||||| ||||||||| |||| ||
Sbjct 1279111 TTGTCCTGGATC-TTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGT 1279169
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || ||||| || ||||| ||||||||
Sbjct 1279170 GATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| ||||| || || ||| |||||| |||||||| || || | | ||||
Sbjct 2719460 AGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTT 2719401
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||||||||| || ||||| || || || | ||| |||||||| || | |||||
Sbjct 2719400 CCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 2719341
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||| ||| || ||| ||||| |||||||| |||| ||
Sbjct 2719340 TTGTCCTGGATC-TTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGT 2719282
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || ||||| || ||||||||
Sbjct 2719281 GATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || || |||||| || ||||| ||||| | | || ||
Sbjct 2719688 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTACGA 2719629
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | |||||| |||||||| || || | ||| |||||||| || | ||| |||
Sbjct 2719628 CCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCC 2719569
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | || ||| | ||| ||||| |||||| || |||| ||
Sbjct 2719568 TTATCCTGGATC-TTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAAAGT 2719510
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || ||||| || ||||||||
Sbjct 2719509 GATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556
|||||| || || || |||||| || ||||| || || | | || || | || ||
Sbjct 1278771 CACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTC 1278830
Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616
||| ||||| || || || || | |||||| |||||||| || | || ||||||||
Sbjct 1278831 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 1278890
Query 34617 GATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675
|||||| | || ||| | ||| ||||| |||||| ||||| | || || || |
Sbjct 1278891 GATCTTA-GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTAATGGTCT 1278949
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || | || ||||| |||||||||||
Sbjct 1278950 TTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| || ||| |||||| || ||||| || || | ||| |||| | || || | ||
Sbjct 1279233 ATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTG 1279292
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| || || || || || | ||| |||||||| || | |||||||||||| |||| |
Sbjct 1279293 CTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATC-T 1279351
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| | || ||| | || ||||| |||||||| || | || ||||| || || |
Sbjct 1279352 TGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTTTCCCG 1279411
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || |||||||||||
Sbjct 1279412 TTAAGGTCTTGACGAAAATCTGCAT 1279436
>seq1
Length=30427671
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | |||||||||||| ||| ||||||||| ||||| ||||| |
Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || |||||||||| || ||||||||||| || | | ||| || ||||| ||
Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||| || |||| || | ||||| | ||| || || || || ||
Sbjct 24277169 ATTCCTTCCTTATCCTGGATC-TTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAAC 24277227
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || ||||| || || || || || ||||||||||||||
Sbjct 24277228 CTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||| | || || || ||||||||| ||||| ||||||| |
Sbjct 20549987 CCACCACGAAGACGCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCA 20549928
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || || || || ||||| || | | ||||||||| || ||
Sbjct 20549927 AGAGTCCGACCATCTTCGAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 20549868
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || || ||||| ||||| | || | | || ||||| || |||||| ||
Sbjct 20549867 ATCCCTTCTTTGTCCTGAATCTTG-GCCTTCAGGTTATCGATTGTATCAGAGCTCTCAAC 20549809
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | ||| || ||||| ||||| | || ||||| |||||||||||
Sbjct 20549808 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 20549761
Score = 100 bits (110), Expect = 2e-16
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537
|| || | ||||||||| || | || ||||| ||| || || ||||| ||||| |
Sbjct 24276596 CCACCACGAAGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 24276655
Query 34538 AAAGTG-TTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| ||| | || || || |||||||| ||||| || | | ||||||||| ||
Sbjct 24276656 AAAGTCCTTC---CATCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGT 24276712
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTC 34655
|| | | ||||| || ||||| | ||| || || |||||||||| ||||||
Sbjct 24276713 GGGATCCATTCCTTATCCTGAATCTTA-GCTTTGACATTATCAATTGTGTCTGAGCTCTC 24276771
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||| ||| || || || || || || ||||||||||| || |||||
Sbjct 24276772 AACCTCCAAGGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCAT 24276822
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/228 (69%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||||||| | || || || |||||| || | ||| || | |
Sbjct 24276824 CCACCACGAAGACGCAACACAAGGTGAAGCGTAGACTCCTTCTG---GATATTGTCAGCA 24276880
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | || ||||| ||||| || || || || | | ||||||||| || ||
Sbjct 24276881 AGTGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 24276940
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| || | || ||| || || |||||| |||||| ||
Sbjct 24276941 ATACCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTATCGATGGTGTCTGAGCTCTCAAC 24276999
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | || |||||||| ||||||||
Sbjct 24277000 CTCCAAAGTGATTGTCTTTCCAGTGAGGGTCTTCACAAATATCTGCAT 24277047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729573149631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |