Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq7 585 3e-162 seq2 269 3e-67 seq6 260 2e-64 >seq7 Length=154478 Score = 585 bits (648), Expect = 3e-162 Identities = 702/954 (74%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | ||||| || | | || || | | || Sbjct 1362 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTT 1303 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1302 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 1243 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || || || || | | || | || | Sbjct 1242 CTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAG 1183 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || ||| | || || ||||||||||||||||| ||| | ||||| |||||||| |||| Sbjct 1182 CTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 1123 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 1122 ACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 1063 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 1062 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 1003 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || |||| || |||||| | |||||||| | ||||| ||| || Sbjct 1002 CAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTT 943 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 942 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 883 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 882 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 823 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || ||||| || ||||| || | || |||||| | | || || || | Sbjct 822 GCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 763 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 762 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACA 703 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | || ||||| |||||| |||||| || | Sbjct 702 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATT 643 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 642 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 583 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || | || ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 582 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 523 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 522 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 463 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 462 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 409 >seq2 Length=19698289 Score = 269 bits (298), Expect = 3e-67 Identities = 350/484 (72%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 176618 TATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTG 176677 ||||||| || |||||||||||||| ||||||||||| || ||| | || ||||| |||| Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 176678 TGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTA-CTTCTTCACTTGTT 176736 | || || || || || || || || || || |||| || ||||| | | Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || | ||||| ||||| || | ||||||| |||||| ||||||||| | Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || ||||||||||||||||| || ||||| ||||| || | ||||||| | Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------T 3331837 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| || || | | | || |||||| | || || | || || || | || ||| Sbjct 3331836 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 |||||||| | ||| || |||| ||||| |||||||| || ||||| || |||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 || || | || | || || ||| ||| |||| ||||| |||||||||| Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 ||| ||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||| Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597 Query 177097 GCTG 177100 |||| Sbjct 3331596 GCTG 3331593 >seq6 Length=366924 Score = 260 bits (288), Expect = 2e-64 Identities = 348/484 (72%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 176618 TATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTG 176677 ||||||| || |||||| |||||| ||||||||||| || ||| | || ||||| |||| Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 176678 TGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTA-CTTCTTCACTTGTT 176736 | || || || || || || || || || || |||| || ||||| | | Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || | ||||| ||||| || | ||||||| |||||| ||||||||| | Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || ||||||||||||||||| || ||||| ||||| || | ||||||| | Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------T 334573 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| || || | | | || |||||| | || || | || || || | || ||| Sbjct 334574 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 |||||||| | ||| || |||| ||||| |||||||| || ||||| || |||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 || || | || | || || ||| ||| |||| ||||| |||||||||| Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 ||| ||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||| Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813 Query 177097 GCTG 177100 |||| Sbjct 334814 GCTG 334817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494347194240