Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq6 80.6 8e-11 seq2 80.6 8e-11 >seq6 Length=366924 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 104521 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 104462 Query 36341 C 36341 | Sbjct 104461 C 104461 >seq2 Length=19698289 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 3495076 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 3495017 Query 36341 C 36341 | Sbjct 3495016 C 3495016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154169587184652