Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq4 84.2 2e-11 >seq2 Length=19698289 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 ||||| || ||| ||| | |||| | | || |||||||||||||||| ||| Sbjct 7082265 AGTTGCTCTTGCAGAGGCCTCACGTGAGTTTTGTATACATGAGCATCCCCAAGAACATGG 7082324 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 || || |||||||| ||| | || ||||| | |||| | || | | | ||| Sbjct 7082325 ATAAAATCACCAGGAACAAGATCACACACATGAGCCAGCATGCAAGTAAGAAGAGAGTAA 7082384 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 || | ||||| || ||||| || ||||| |||||||| | ||| |||| ||| || Sbjct 7082385 GAAGCAATGTTAAACGGCACACCAAGGCCCATATCTGCTGAACGCTGATACATTTGACAT 7082444 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||||| ||||| | ||| ||||||||||| Sbjct 7082445 GAGAGTTCCCCTTCTGCCACATAAAACTG 7082473 >seq4 Length=18585056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || || || |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 16511599 TTAAACGGTACGCCGAGACCCATATCGGCTGAACGCTGATACATTTGACATGAAAGTTCT 16511658 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||||||||||||||| | ||||| |||||||| || |||| | || Sbjct 16511659 CCATTTGCAACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGA 16511718 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 16511719 TCAGAAGGATTCCAAGCTG 16511737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414476764639948