Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=26975502 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || ||||||||| || || ||||| ||| Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || ||||| || || ||||| ||||| | ||||||||| |||||| Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| || ||| || ||||| | | | || || |||| || Sbjct 6973901 -ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TC 6973956 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| |||||||| || || |||||||||||||| Sbjct 6973957 AACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || ||| ||||| || || || || ||| Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | |||| |||||||| || || ||||| ||||| | |||||| || | || Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATC---GCTCGACTC 39233 | | || |||||| ||| || ||||| ||| | || || || |||| || Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGA-CGTTGTCAATAGTGTCAGAGCTC---TC 772617 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || ||||| || || |||||||||||||| Sbjct 772618 AACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545563354391