Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq5 158 1e-33
>seq5
Length=26975502
Score = 158 bits (174), Expect = 1e-33
Identities = 388/583 (67%), Gaps = 18/583 (3%)
Strand=Plus/Minus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604
||||| || |||||||| || | |||||||||||| ||||| |||||| ||||| ||
Sbjct 16408798 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTG 16408739
Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664
| ||| ||||||||||||| || || | ||| ||||| | ||| || || |||
Sbjct 16408738 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAG 16408679
Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721
||||| ||||| ||| ||||||||||| | || | | ||| ||||||
Sbjct 16408678 AATATACCTTCAACGCAAGCAAACGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 16408626
Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780
| || |||||||| | ||||| | ||||||||| | | || ||||| || | ||
Sbjct 16408625 TCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGAT 16408568
Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840
|| ||| | | | | | || ||||| ||||| ||||| | || || ||
Sbjct 16408567 TGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACT 16408508
Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
|||||| || || || ||||| || || || || || |||||||| ||| | ||||||
Sbjct 16408507 ATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 16408448
Query 4901 TGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959
|| | ||||| ||| ||| ||||| | | || ||| || || |||||
Sbjct 16408447 TGAGATCTGAACATCG-GACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTG 16408389
Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---T 5016
|| || || || || | || || || |||| ||||||| | ||| |
Sbjct 16408388 ATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGT 16408329
Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076
||| ||||| | | |||| || | ||| |||||||| | ||||| || || ||||
Sbjct 16408328 TTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTT 16408269
Query 5077 CCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
| ||||| |||||||| |||||| | || || || || ||
Sbjct 16408268 CGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGG 16408226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049563567331
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |