Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=26975502 Score = 158 bits (174), Expect = 1e-33 Identities = 388/583 (67%), Gaps = 18/583 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || | |||||||||||| ||||| |||||| ||||| || Sbjct 16408798 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTG 16408739 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||||||||||| || || | ||| ||||| | ||| || || ||| Sbjct 16408738 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAG 16408679 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 ||||| ||||| ||| ||||||||||| | || | | ||| |||||| Sbjct 16408678 AATATACCTTCAACGCAAGCAAACGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 16408626 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | || |||||||| | ||||| | ||||||||| | | || ||||| || | || Sbjct 16408625 TCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGAT 16408568 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 || ||| | | | | | || ||||| ||||| ||||| | || || || Sbjct 16408567 TGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACT 16408508 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||| || || || ||||| || || || || || |||||||| ||| | |||||| Sbjct 16408507 ATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 16408448 Query 4901 TGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 || | ||||| ||| ||| ||||| | | || ||| || || ||||| Sbjct 16408447 TGAGATCTGAACATCG-GACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTG 16408389 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---T 5016 || || || || || | || || || |||| ||||||| | ||| | Sbjct 16408388 ATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGT 16408329 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 ||| ||||| | | |||| || | ||| |||||||| | ||||| || || |||| Sbjct 16408328 TTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTT 16408269 Query 5077 CCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 | ||||| |||||||| |||||| | || || || || || Sbjct 16408268 CGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGG 16408226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049563567331