Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 seq3 178 2e-39 seq2 89.7 7e-13 >seq5 Length=26975502 Score = 250 bits (276), Expect = 3e-61 Identities = 443/632 (70%), Gaps = 27/632 (4%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || ||||| || |||||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGA 48253 ||||| || ||||||| || ||||| || | ||| ||||| | | |||| | || || Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCGGA 16408683 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTC 48310 |||||||| ||||| ||| ||||| || | |||||| || | || | | | Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCC 16408623 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 |||| ||||| ||||| || || || ||| | ||||||| || ||||| || Sbjct 16408622 GTTG---ATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGAT 16408568 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 ||| ||| ||| | | | || ||| | ||||| | || || || | | ||||| Sbjct 16408567 TGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACT 16408508 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||| |||||||||||||| ||||| || || || |||||||| || | ||||| Sbjct 16408507 ATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 16408448 Query 48491 TGTGATCTGTACCTCCGTACA-AAATC--GTTCAGCCAAATTCTCATTTACTATTCCATC 48547 || |||||| || | || ||| |||| ||| || | |||||| || ||||| || Sbjct 16408447 TGAGATCTGAACAT-CGGACATGAATCTAGTTGAG--AGATTCTCGAGAACGATTCCGTC 16408391 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGG-AAGTCA 48603 || || || || || | || |||||||| || | || ||||||| ||| | Sbjct 16408390 TGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGA 16408331 Query 48604 GTTTATTCCAGTC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 |||| | |||||| |||| |||| || | ||| |||||||| |||||||| || | Sbjct 16408330 GTTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGG 16408275 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAA 48720 |||| || ||||| || ||||| | ||| || | ||||||||||||||| ||| | Sbjct 16408274 ATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGA 16408215 Query 48721 ATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752 ||| || ||| || || ||||| |||||| Sbjct 16408214 ATCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 178 bits (196), Expect = 2e-39 Identities = 288/408 (71%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| | ||| ||||| || ||||| |||||||| || ||| ||||||| | | Sbjct 9980615 GCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGAAAGAGATGATCT 9980674 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| ||||||| | |||||||| | | ||||||||||| || ||||| || Sbjct 9980675 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATG 9980734 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 |||||||| || ||||| || ||||| ||| | ||| || | || || || | || | Sbjct 9980735 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTTGAACAT-CGGA 9980793 Query 48510 CA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 || || || ||| | |||||| ||| ||||| ||| ||||| || || || | Sbjct 9980794 CATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCGAAGAAAGCGAG 9980853 Query 48569 TACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || ||||| || || | | || |||||| || | |||| | |||||| | | Sbjct 9980854 GACGTGTTTGATGAAGTGACGTTCACCGTCGTTG--AGACTGTTT-TCCCAGTCGCGGTT 9980910 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 |||| ||||| |||||||||||| || ||||| |||||||| || |||||||| ||||| Sbjct 9980911 GTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACAT 9980970 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 | ||| || | ||| || |||||||| ||| ||||| | ||| Sbjct 9980971 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018 >seq2 Length=19698289 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | || | || | || ||| |||| |||||| Sbjct 9294858 CCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACCA 9294799 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| |||||||| | || ||||||||| || || Sbjct 9294798 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGAA 9294739 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 9294738 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 9294679 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || ||||| ||||| | ||||| |||||| Sbjct 9294678 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668739216480