Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 212 9e-50 seq3 145 1e-29 seq2 98.7 1e-15 >seq5 Length=26975502 Score = 212 bits (234), Expect = 9e-50 Identities = 610/921 (66%), Gaps = 33/921 (4%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | ||||| ||||| || || || || | | || || Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||| |||||||| ||| ||| | || | | || | | | | Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACACCCAAGCGCAGCCAA 16408968 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| |||||||| || || ||| |||||| |||| |||||| || | | Sbjct 16408967 CAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCAA 16408908 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || || || || ||||||| ||||| |||||||| | | || Sbjct 16408907 GGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACAAT 16408848 Query 46578 CGATGTTA--CTGT-TTCCTCA--CTTGGTGGATGCATCAAATGTTTAAACATTAAACAT 46632 || | | | | | ||| ||| ||| || | | | | || | || ||||| Sbjct 16408847 CGCTTTCAAACGATCTTCATCAAACTTAGTTC-----TAAGAAGACTATATATCAAACAA 16408793 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 || |||||||| ||||| ||||| ||||| ||| |||||||| ||||| ||||| ||| Sbjct 16408792 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCA 16408733 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATAT 46751 ||||||| || || || || | ||| ||||| | | |||| | || || |||||||| Sbjct 16408732 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAAGAATAT 16408674 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT--GGCATCATTATGAATC 46809 ||||| || || || || || | |||||| || | || | ||| | ||| || Sbjct 16408673 ACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TGA-TC 16408616 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || | |||||| || || |||||| | ||||||| || ||||| || ||| ||| Sbjct 16408615 CATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCACGAAAA 16408558 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 ||| | | | || | | ||||| | ||| || || | | ||||||||||| || Sbjct 16408557 AGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACATCTCG 16408498 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 || ||||| || ||||| || || || |||||||| || | ||||| | ||||| Sbjct 16408497 GAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGA 16408438 Query 46990 ACCTCTGTACAA-AATC--GTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || | ||| |||| ||| ||| | ||||| || ||||| || || || Sbjct 16408437 ACATCGG-ACATGAATCTAGTTGAGAGA--TTCTCGAGAACGATTCCGTCTGATGCGGCG 16408381 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAG 47103 || || || | || |||||||| || | ||| ||| | || ||| || | |||| Sbjct 16408380 AAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 16408321 Query 47104 TC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || |||| |||| || | ||| |||||||| ||||||||||| || || || ||| Sbjct 16408320 TCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCT 16408264 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGA 47220 || || ||||| | ||| || | | |||||||| || || ||| |||| || ||| Sbjct 16408263 TTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGT 16408204 Query 47221 TTTTTTGCAAGTATAGGTTCC 47241 || || || || |||||| Sbjct 16408203 GTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 145 bits (160), Expect = 1e-29 Identities = 280/407 (69%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 46877 |||||| | ||| || || || ||||| |||||||| || ||| ||||||| | Sbjct 9980614 AGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGAAAGAGATGATC 9980673 Query 46878 tttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAAT 46937 | | || | ||||||| | ||| ||||| | | ||||||||||| || || || || Sbjct 9980674 TCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGAT 9980733 Query 46938 GTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGT 46997 ||||||||| || ||||| || ||||| ||| | || |||| | || || || | Sbjct 9980734 GTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTTGAACATC-GG 9980792 Query 46998 ACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 ||| || || || | |||||| || ||||| ||| ||||| || || || | Sbjct 9980793 ACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCGAAGAAAGCGA 9980852 Query 47057 ATACATGTTTAATAAAATATTTTTCATCG--GT--AGTCAGTTTATTCCAGTCATTGATA 47112 || ||||| || || | |||| || || || | |||| | |||||| | | Sbjct 9980853 GGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTTT-TCCCAGTCGCGGTTG 9980911 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| ||||| |||||||||||| || ||||||||||| || || |||||||| ||||| Sbjct 9980912 TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATT 9980971 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 | ||| || | | || || || || || ||| ||||| | ||| Sbjct 9980972 TCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 |||||||| ||||| |||||||||||||| ||||| ||||| |||| | ||| ||| | Sbjct 9980047 TTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCTTGAAGTGAAATAAGT 9980106 Query 46399 TCCATAAAATCAAACGGATTAGTAACA 46425 ||||| |||| ||||||||||||||| Sbjct 9980107 TCCATCCAATCGAACGGATTAGTAACA 9980133 >seq2 Length=19698289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | || || | || | || | || ||| |||| ||| || Sbjct 9294858 CCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACCA 9294799 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| |||||||| |||||||||||| || || Sbjct 9294798 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGAA 9294739 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 9294738 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 9294679 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || |||||||| ||||| | ||||| |||||| Sbjct 9294678 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | | || Sbjct 9294517 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 9294458 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || || | || ||||| | ||| || || || ||||| || | ||||| Sbjct 9294457 GTAGGTTTGGATCACGGAATCAATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCA 9294399 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| | | | |||||| | ||| ||| | || | Sbjct 9294398 GCATGTGTTGAGGCCTTTCAACAACAGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 9294339 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||||||| ||||| || Sbjct 9294338 GAGTTTTAAATCCAAAGTA 9294320 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 || |||||||||||||| || || || || |||||||||||||||||||| | | | || Sbjct 9296153 AGGATAAATGCATCTGCAAGGCCTTGTACACCAATACCAATAGGTCTATGACGCATGTTT 9296094 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || ||| | ||| || ||||| | |||||| || ||||||||||| Sbjct 9296093 GAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 9296038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || || | ||||||||| ||||||| ||| ||||||| Sbjct 9295307 CTCTCTTTCATACTTAGTGTACAGTGTCTCAAATTCAGCTCCCCAGCAATCTGCCAAACC 9295248 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||| || ||||| | || |||||||| |||| | || |||| | ||| || Sbjct 9295247 TGGAGCTTCGTTAGGACAAAACAGTGACCACTGCCCATTATTCTGGACCCTCTCCATGAA 9295188 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| || | ||| |||||| ||| | ||||| | || ||||||| Sbjct 9295187 AAGATCTGGAAGCCAGAGAGCATAAAACAAATCTCTAGCCCTGTGTTCTTC 9295137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934337618240