Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq7 691 0.0 seq2 369 5e-97 seq6 360 2e-94 seq1 136 5e-27 >seq7 Length=154478 Score = 691 bits (766), Expect = 0.0 Identities = 754/996 (76%), Gaps = 4/996 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || |||||| | ||||| || || | || |||||||| | Sbjct 1397 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1338 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTC-ATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | || ||| | ||||||| Sbjct 1337 GATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTC 1279 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || ||||| ||| |||| || || | || ||||||| Sbjct 1278 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACA 1219 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || || ||||| || ||||| |||| || |||||| | || || || || | Sbjct 1218 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAA 1159 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 |||||||||| ||||| | ||||| ||||| || ||||| |||||||| |||| | | Sbjct 1158 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1099 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | ||||| | |||| || || || |||||||||||||||||| | || || Sbjct 1098 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1039 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || | Sbjct 1038 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || ||||||| | ||||| || |||| |||||||||||| || || | Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || || |||| |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| | ||||| |||||||| ||||| || || || || ||||| ||||| | Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| ||||| | | | | || | |||||||| || ||| || || | Sbjct 798 GTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 740 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||| ||||||||||| || ||||||||||| |||||||| || || ||| Sbjct 739 GGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 680 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||| ||||| |||||| || ||||||||||||||| | || |||||| | Sbjct 679 GGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 620 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 || |||||||| || || || || |||||||||||| | ||| |||| |||||||| || Sbjct 619 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 560 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| |||||||| || |||||||| || | ||||| ||||||| ||||| | || Sbjct 559 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 500 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || || | ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 499 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 440 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 184188 ||||||||||||||||| ||||| ||||||| |||| Sbjct 439 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 506 bits (560), Expect = 3e-138 Identities = 716/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 32766 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32825 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 32826 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32885 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 32886 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32945 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 32946 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33005 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 33006 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 33065 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 33066 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 33125 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| ||| Sbjct 33126 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTC 33184 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 33185 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33244 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 33245 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33304 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||||| | || || ||||||| |||| Sbjct 33305 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 33364 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 33365 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33424 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 33425 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33484 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 33485 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 33544 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||| | ||| | ||||| ||||| |||||| Sbjct 33545 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGAC 33604 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || ||||| || || ||||| |||||||| || Sbjct 33605 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAA 33664 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | ||||| |||||||| | ||||| || |||||| Sbjct 33665 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33724 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 33725 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768 >seq2 Length=19698289 Score = 369 bits (408), Expect = 5e-97 Identities = 377/488 (77%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 183703 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTC 183762 ||||| || ||||||||||| || |||||||| || |||||| | ||||| |||||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 183763 TTCGGTGGTTCTCTGTTCAGTGCAATGCACGG-TTCTCTGGTTACTTCCTCGCTGGTTC- 183820 ||||| || || || || ||||| || || || ||| |||| ||||| | | | | || Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTC-TAGTTTGATCA 3331947 Query 183821 GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 183880 | ||||||| || ||| || || | ||||||| ||||||||||||||| | | Sbjct 3331946 GGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAA 3331887 Query 183881 CCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGT 183940 | ||||||||||| ||||||||||| || ||||| || ||||||||| | ||| Sbjct 3331886 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-----GTTTC-- 3331834 Query 183941 TTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGT 184000 ||||||||||||||| | || |||||| | || |||||||| || || || || |||| Sbjct 3331833 --AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 3331776 Query 184001 TTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGT 184060 |||||||| | ||| ||||||||||||| || ||||| |||||||| || |||||||| | Sbjct 3331775 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAAT 3331716 Query 184061 CCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 184120 | | ||||| ||||||| ||||| | || || ||||| || || | ||||||||| Sbjct 3331715 CAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 3331656 Query 184121 GTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTG 184180 |||| || ||||| ||||| || ||||||||||||||||||||||| ||||| |||| Sbjct 3331655 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 3331596 Query 184181 CTGCTGAG 184188 ||| |||| Sbjct 3331595 CTGTTGAG 3331588 >seq6 Length=366924 Score = 360 bits (398), Expect = 2e-94 Identities = 375/488 (77%), Gaps = 12/488 (2%) Strand=Plus/Plus Query 183703 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTC 183762 ||||| || |||||| ||| || |||||||| || |||||| | ||||| |||||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 183763 TTCGGTGGTTCTCTGTTCAGTGCAATGCACGG-TTCTCTGGTTACTTCCTCGCTGGTTC- 183820 ||||| || || || || ||||| || || || ||| |||| ||||| | | | | || Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTC-TAGTTTGATCA 334463 Query 183821 GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 183880 | ||||||| || ||| || || | ||||||| ||||||||||||||| | | Sbjct 334464 GGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAA 334523 Query 183881 CCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGT 183940 | ||||||||||| ||||||||||| || ||||| || ||||||||| | ||| Sbjct 334524 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-----GTTTC-- 334576 Query 183941 TTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGT 184000 ||||||||||||||| | || |||||| | || |||||||| || || || || |||| Sbjct 334577 --AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 334634 Query 184001 TTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGT 184060 |||||||| | ||| ||||||||||||| || ||||| |||||||| || |||||||| | Sbjct 334635 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAAT 334694 Query 184061 CCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 184120 | | ||||| ||||||| ||||| | || || ||||| || || | ||||||||| Sbjct 334695 CAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 334754 Query 184121 GTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTG 184180 |||| || ||||| ||||| || ||||||||||||||||||||||| ||||| |||| Sbjct 334755 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 334814 Query 184181 CTGCTGAG 184188 ||| |||| Sbjct 334815 CTGTTGAG 334822 >seq1 Length=30427671 Score = 136 bits (150), Expect = 5e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||||||||||||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 22444791 TTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 22444850 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||||||||| ||| ||| | ||| ||||||||||| || || || ||||| Sbjct 22444851 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGTTTCC 22444910 Query 171124 TTGATGATGATCAGATTG 171141 |||||||||| ||||||| Sbjct 22444911 TTGATGATGAACAGATTG 22444928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070345568840