Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq7 695 0.0 seq2 324 2e-83 seq6 315 8e-81 seq1 84.2 2e-11 >seq7 Length=154478 Score = 695 bits (770), Expect = 0.0 Identities = 752/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| ||||| || || || ||| | || | || ||||| || || || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | |||||| Sbjct 1336 ATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || ||||| || |||| || || | || |||||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 || || || ||||| |||| ||| ||||| ||||| || |||| || ||||| || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| ||| | || |||||||| |||||||| ||||||| |||| |||| Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 ||| |||||||||||||||||| || ||||| || |||||||| || || |||| ||| Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| || ||||||| | ||||| || ||| ||||||| |||||||| || || Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| ||| | || |||||||||||||||||||| || |||||||| Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| |||||| || | | || ||||| |||||||| || || | || Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 ||||| || || || ||||||||||| |||||||| || || ||||||||||| ||||| Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || ||||||||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| |||||||||||| | || |||| || ||||| ||||| Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 ||| || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 498 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 497 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 438 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920 ||||||||||||||| ||||| ||||||| |||| Sbjct 437 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 567 bits (628), Expect = 8e-157 Identities = 722/991 (73%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 32783 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTC 32842 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 32843 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 32902 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || |||||||||||||| || | Sbjct 32903 GCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 32962 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | || | || ||||||||||| | ||||| || || | || Sbjct 32963 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 33022 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||| ||||||| || |||||||| || || ||| | ||| Sbjct 33023 TGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 33082 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGC 165538 ||||| ||| | || || |||||||| || ||| || || | | || ||||| ||||| Sbjct 33083 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGC 33141 Query 165539 TATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGG 165598 || || ||||||||||| |||||||| || ||| ||| || || || ||||| || || Sbjct 33142 AATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGG 33201 Query 165599 ACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCT 165658 ||||| |||||||| || || || || || || || || || |||||| | || Sbjct 33202 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCT 33261 Query 165659 CTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGG 165718 ||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || || Sbjct 33262 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGG 33321 Query 165719 TATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTA 165778 | | | |||| || |||| | || |||||||||| ||| ||||| |||||||| | Sbjct 33322 TGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 33381 Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || ||| || ||| | ||||| | || ||||| Sbjct 33382 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 33441 Query 165839 TTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 165898 |||||| |||||||| |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 33442 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 33501 Query 165899 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 165958 ||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 33502 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGC 33561 Query 165959 TATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| | | ||| | || | || || ||||| ||||| || || || ||||| || Sbjct 33562 TCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 33621 Query 166019 TAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGA 166078 | || || || |||||||| ||||| || |||||||| ||||| || || | || || Sbjct 33622 CCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGA 33681 Query 166079 AGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGA 166138 ||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||||||| Sbjct 33682 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 33741 Query 166139 AGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | ||| | || ||||| |||||| Sbjct 33742 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 33772 >seq2 Length=19698289 Score = 324 bits (358), Expect = 2e-83 Identities = 364/487 (75%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTG 164494 |||||||||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 164495 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGG-TTCGCTGGTTACTTCTTCGCTGGTTCG 164553 || ||||| || || || ||||| || || || ||| |||| |||||| || | | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 164554 TGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAAC 164613 || |||| |||||||| || || | ||||||| || ||||| |||||| |||| Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 164614 CTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTT 164673 |||||||| || || ||||| ||||| ||||| || |||| |||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 164674 CAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 164733 |||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 164734 TACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 164793 ||||||| | || ||||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 164794 CATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGG 164853 | | ||| |||| || ||||| | || || ||||| || || | ||||||||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 164854 TCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 164913 | || || ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 Query 164914 TGCTGAG 164920 || |||| Sbjct 3331594 TGTTGAG 3331588 >seq6 Length=366924 Score = 315 bits (348), Expect = 8e-81 Identities = 362/487 (74%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTG 164494 ||||||||||||||| ||| || |||||||| || || ||| | || ||||| ||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 164495 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGG-TTCGCTGGTTACTTCTTCGCTGGTTCG 164553 || ||||| || || || ||||| || || || ||| |||| |||||| || | | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 164554 TGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAAC 164613 || |||| |||||||| || || | ||||||| || ||||| |||||| |||| Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 164614 CTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTT 164673 |||||||| || || ||||| ||||| ||||| || |||| |||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 164674 CAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 164733 |||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 164734 TACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 164793 ||||||| | || ||||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 164794 CATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGG 164853 | | ||| |||| || ||||| | || || ||||| || || | ||||||||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 164854 TCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 164913 | || || ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Query 164914 TGCTGAG 164920 || |||| Sbjct 334816 TGTTGAG 334822 >seq1 Length=30427671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 |||||| |||||| ||| ||||||| || ||||||||||| || | || | || Sbjct 22444771 GTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 22444830 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||||||| || || || ||| | || ||||| | || || Sbjct 22444831 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGA 22444890 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 || |||||| ||||| || ||||| || || | | || || |||| ||||| Sbjct 22444891 TCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTG 22444950 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || | |||| || || ||| | ||||| || | |||||||| || Sbjct 22444951 TGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 22445001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654351205240