Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq7 634 7e-177
seq2 325 5e-84
seq6 316 2e-81
seq1 113 5e-20
>seq7
Length=154478
Score = 634 bits (702), Expect = 7e-177
Identities = 740/994 (74%), Gaps = 4/994 (0%)
Strand=Plus/Minus
Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657
|||||||||||| |||| ||| | || ||||| || | || ||||| ||||| ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTC-ATCGTCGCTTTCGTCGCTGCTCC 177716
||||||||||| | | | || || ||||||| || |||| ||| | ||||||||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278
Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776
||| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218
Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836
|| ||||| ||||| || ||||| ||||| |||||||| | || || || || ||
Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158
Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896
||||||||| || || | ||||| ||||| ||||| || ||||||| |||| || |
Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098
Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956
| ||||| | | ||| | | || ||||||||||||||||||||| || |||
Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038
Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016
|| ||||||||||| ||||| ||| ||||| || ||||| || || || || ||||
Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978
Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076
||| ||| | | ||||| | ||||| || ||| ||||| | |||||| || || ||
Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918
Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136
| ||| || ||||||| ||| |||| ||||| || ||||||||||| || ||||||||
Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858
Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196
|| |||||||| || || |||||||| || || || || || || ||||| ||||| ||
Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798
Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255
||| |||| ||||| | | | | || | |||||||| || || ||| | || | |
Sbjct 797 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315
|||||| ||||| ||||||||||| || |||||||| || |||||||| ||||| || |
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375
| || |||| |||||||| || |||||||| || ||||| | || |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435
| || ||||| || || ||||| ||||| |||||| | ||| |||| || ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495
|||| || |||||||| |||||||| || | | |||||||| || || | || |
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499
Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555
| ||||| || || | ||||||||| |||||||||||||| ||||| || |||||||
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589
|||||||||||||||| ||||| ||||||| |||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 405
Score = 542 bits (600), Expect = 3e-149
Identities = 730/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898
|||||| | | ||||||||| | | | || || ||||||||||| |||||||| |||
Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815
Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958
|| | || || ||| ||| || | || | || |||||| |||| || ||||| ||
Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875
Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018
|| || || ||||||||||| || | || ||| ||| | || || || ||||| |
Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935
Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078
|| ||||| || || ||||||||| | | | | ||||| | | | || ||||||
Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32995
Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138
|| ||||| || |||||||| || ||| ||| | || || |||||| |||||||
Sbjct 32996 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 33055
Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197
|| |||||||| || ||||| | |||||||| ||| | || || |||||| | || ||
Sbjct 33056 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33115
Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257
||| || | | || ||||| ||||||||||| || |||||||| |||||||| |||||
Sbjct 33116 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGT 33174
Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317
||||| || || || ||||| || || || || |||||||||||||| |||||
Sbjct 33175 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33234
Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377
|| || || || || || ||| | ||||| | || || || || || ||||| | ||
Sbjct 33235 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33294
Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437
||| || || |||||||| || || ||| | ||||||| || |||| || || |||||
Sbjct 33295 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 33354
Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497
||||||||| ||||| || || | |||||||| |||| ||||||||||| ||
Sbjct 33355 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33414
Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557
|| | || || |||| || || || ||||| ||||| || || ||||| || |||||
Sbjct 33415 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33474
Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617
|| |||||||| | || || |||||| |||||| |||||||||||||||| |||||
Sbjct 33475 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33534
Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677
|| || | ||| | |||| | |||| | | ||| | || | ||||| |
Sbjct 33535 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACG 33594
Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737
|| |||||||| ||||| || || ||| | || || || ||||| || || ||||| ||
Sbjct 33595 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 33654
Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797
|||||| || || || || || || |||||| | |||||||||||||| | |||||
Sbjct 33655 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33714
Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851
|| ||||||||| || |||| ||||| || || | ||| | || ||||||||
Sbjct 33715 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768
>seq2
Length=19698289
Score = 325 bits (360), Expect = 5e-84
Identities = 366/487 (75%), Gaps = 12/487 (2%)
Strand=Plus/Minus
Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164
||||| || ||||||||||| || |||||||| || |||||||| || || ||||||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGG-TTCTCTGGTTACTTCCTCGCTGGTTC- 178222
|| || || || || || ||||| || || || ||| |||| ||||| | | | | ||
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTC-TAGTTTGATCA 3331947
Query 178223 GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 178282
| ||||||| || || ||| | || | ||||||| ||||||||||||||| | |
Sbjct 3331946 GGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAA 3331887
Query 178283 CCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342
| |||||||| || |||||||||||||| || || || ||||||||| |
Sbjct 3331886 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT--------- 3331836
Query 178343 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 178402
||||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||
Sbjct 3331835 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 3331776
Query 178403 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 178462
| |||||| | ||| ||||||| ||||| |||||||| || ||||| || |||||||| |
Sbjct 3331775 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAAT 3331716
Query 178463 CCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 178522
| | | |||||||| || || | || || ||||| || || | |||||||||
Sbjct 3331715 CAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 3331656
Query 178523 GTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTG 178582
||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| ||||
Sbjct 3331655 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 3331596
Query 178583 CTGCTGA 178589
||| |||
Sbjct 3331595 CTGTTGA 3331589
>seq6
Length=366924
Score = 316 bits (350), Expect = 2e-81
Identities = 364/487 (75%), Gaps = 12/487 (2%)
Strand=Plus/Plus
Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164
||||| || |||||| ||| || |||||||| || |||||||| || || ||||||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGG-TTCTCTGGTTACTTCCTCGCTGGTTC- 178222
|| || || || || || ||||| || || || ||| |||| ||||| | | | | ||
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTC-TAGTTTGATCA 334463
Query 178223 GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 178282
| ||||||| || || ||| | || | ||||||| ||||||||||||||| | |
Sbjct 334464 GGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAA 334523
Query 178283 CCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342
| |||||||| || |||||||||||||| || || || ||||||||| |
Sbjct 334524 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT--------- 334574
Query 178343 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 178402
||||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||
Sbjct 334575 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 334634
Query 178403 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 178462
| |||||| | ||| ||||||| ||||| |||||||| || ||||| || |||||||| |
Sbjct 334635 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAAT 334694
Query 178463 CCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 178522
| | | |||||||| || || | || || ||||| || || | |||||||||
Sbjct 334695 CAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 334754
Query 178523 GTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTG 178582
||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| ||||
Sbjct 334755 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 334814
Query 178583 CTGCTGA 178589
||| |||
Sbjct 334815 CTGTTGA 334821
>seq1
Length=30427671
Score = 113 bits (124), Expect = 5e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211
||||||||| ||||| || |||| ||||||||||||||||| ||| | || |
Sbjct 22444767 TTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGC 22444826
Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271
||||| ||||| |||||| | |||||||| ||||| || ||| | | || || | |
Sbjct 22444827 CTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTG 22444886
Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331
| ||||| || || |||||||||||||| ||||| | || ||| || |||| |
Sbjct 22444887 TTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCA 22444946
Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386
|||||| | | || ||||| ||| | ||||| || | |||||||| ||
Sbjct 22444947 CTTGTGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 22445001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596307147823120
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