Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3 102 8e-17 >seq3 Length=23459830 Score = 102 bits (112), Expect = 8e-17 Identities = 205/302 (68%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 23731 ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCA 23790 ||||||||||| || |||||| | | | |||| |||||| | ||||| ||||| Sbjct 9980645 ATTGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCG 9980704 Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 | || | ||||||||| || || || || |||||||| || ||||| || || || ||| Sbjct 9980705 AGAAGGAGACTATACATCTCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764 Query 23851 CATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACA 23910 | || ||||| | ||||||||| | || | ||| | ||| || || Sbjct 9980765 GCACGCGCCTCAGAGACTTGAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACG 9980824 Query 23911 ATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--AG 23968 || || ||| ||||| |||||||| || || | ||| || || || | |||| | | Sbjct 9980825 ATTCCGTCAGATGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCG 9980884 Query 23969 TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAA 24027 |||| | | |||| ||| || | |||| ||||| ||| ||||| || | ||||| Sbjct 9980885 TTGAGACTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAG 9980944 Query 24028 AA 24029 || Sbjct 9980945 AA 9980946 Score = 98.7 bits (108), Expect = 1e-15 Identities = 295/447 (66%), Gaps = 20/447 (4%) Strand=Plus/Plus Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 ||||| || || ||||||||| | ||||| ||||| || || || | | ||| ||| | Sbjct 9980047 TTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCTTGAAGTGAAATAAGT 9980106 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT----TACATGATAATTCCTT 23333 ||||| |||| || ||||||| | | || || ||| ||| | || Sbjct 9980107 TCCATCCAATCGAACGGATTAGTAACACCGTACAC--CTTCCCGTACCCAAGCGCACCC- 9980163 Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 ||||||||||| || ||||| |||||||| |||| |||||||||| ||| || || | Sbjct 9980164 -AAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAAC 9980222 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 | |||| ||| || | | || | | || || || || || | Sbjct 9980223 CAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 9980282 Query 23454 TATTTGAACAATAAC---TTCTTCACTAGGTGGATATTTTAAATA-CTTAAACAATAAAC 23509 ||| || | || |||||| ||| | | |||| | || | | | | || || Sbjct 9980283 GATT-GATT--TCACGCGTTCTTCGCTAAGCTT-TGTTTTGAGTAGCGTGTAGAGTAGAC 9980338 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 | || |||||||| |||| ||||| || | |||||||| || || |||||||||| Sbjct 9980339 AAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATC 9980398 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629 | ||||| | ||||||||| || | ||| || |||| | ||| |||||| ||||| | Sbjct 9980399 CAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGA 9980458 Query 23630 TACCCTCAACAGCCGCAAAGGCCACAA 23656 |||| |||||| |||||| || || Sbjct 9980459 TACCTTCAACA----CAAAGGACATAA 9980481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487954369800