Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 8e-17
>seq3
Length=23459830
Score = 102 bits (112), Expect = 8e-17
Identities = 205/302 (68%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 23731 ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCA 23790
||||||||||| || |||||| | | | |||| |||||| | ||||| |||||
Sbjct 9980645 ATTGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCG 9980704
Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850
| || | ||||||||| || || || || |||||||| || ||||| || || || |||
Sbjct 9980705 AGAAGGAGACTATACATCTCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764
Query 23851 CATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACA 23910
| || ||||| | ||||||||| | || | ||| | ||| || ||
Sbjct 9980765 GCACGCGCCTCAGAGACTTGAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACG 9980824
Query 23911 ATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--AG 23968
|| || ||| ||||| |||||||| || || | ||| || || || | |||| | |
Sbjct 9980825 ATTCCGTCAGATGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCG 9980884
Query 23969 TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAA 24027
|||| | | |||| ||| || | |||| ||||| ||| ||||| || | |||||
Sbjct 9980885 TTGAGACTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAG 9980944
Query 24028 AA 24029
||
Sbjct 9980945 AA 9980946
Score = 98.7 bits (108), Expect = 1e-15
Identities = 295/447 (66%), Gaps = 20/447 (4%)
Strand=Plus/Plus
Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277
||||| || || ||||||||| | ||||| ||||| || || || | | ||| ||| |
Sbjct 9980047 TTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCTTGAAGTGAAATAAGT 9980106
Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT----TACATGATAATTCCTT 23333
||||| |||| || ||||||| | | || || ||| ||| | ||
Sbjct 9980107 TCCATCCAATCGAACGGATTAGTAACACCGTACAC--CTTCCCGTACCCAAGCGCACCC- 9980163
Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393
||||||||||| || ||||| |||||||| |||| |||||||||| ||| || || |
Sbjct 9980164 -AAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAAC 9980222
Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453
| |||| ||| || | | || | | || || || || || |
Sbjct 9980223 CAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 9980282
Query 23454 TATTTGAACAATAAC---TTCTTCACTAGGTGGATATTTTAAATA-CTTAAACAATAAAC 23509
||| || | || |||||| ||| | | |||| | || | | | | || ||
Sbjct 9980283 GATT-GATT--TCACGCGTTCTTCGCTAAGCTT-TGTTTTGAGTAGCGTGTAGAGTAGAC 9980338
Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569
| || |||||||| |||| ||||| || | |||||||| || || ||||||||||
Sbjct 9980339 AAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATC 9980398
Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629
| ||||| | ||||||||| || | ||| || |||| | ||| |||||| ||||| |
Sbjct 9980399 CAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGA 9980458
Query 23630 TACCCTCAACAGCCGCAAAGGCCACAA 23656
|||| |||||| |||||| || ||
Sbjct 9980459 TACCTTCAACA----CAAAGGACATAA 9980481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521487954369800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |