Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq2 107 2e-18 seq1 91.5 1e-13 seq5 84.2 2e-11 >seq4 Length=18585056 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || ||| ||||||||||||||| ||||||| Sbjct 2719241 CCTCCACGCAGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2719182 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || || || |||||||| |||| | ||| ||||||| ||| Sbjct 2719181 AAAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 2719122 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | ||||| |||||| Sbjct 2719121 ATACCCTCTTTGT-CTTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCAC 2719063 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || |||| |||||| |||||||||||||| Sbjct 2719062 CTCCAAAGTGATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||| ||||| ||||||||| ||||| || || | Sbjct 2588506 CCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCC 2588565 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || || ||||| |||||||| |||| | ||| ||||||| ||| Sbjct 2588566 AAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 2588625 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | |||||| || ||| || ||| | || | || | |||| |||| || Sbjct 2588626 ATACCCTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TC 2588681 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || ||||| || ||||| || || || |||||||||||||| Sbjct 2588682 CACCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||||| Sbjct 2588278 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2588337 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 2588338 AAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 2588397 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||||| || || | ||||| ||| || Sbjct 2588398 ATGCCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTATCAATGGTGTCGGAGCTCTCAAC 2588456 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||||||||| |||||||| Sbjct 2588457 TTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTTACGAAGATCTGCAT 2588504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||||||||| ||||| | Sbjct 1278982 CCTCCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 1279041 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || || || |||||||| |||| | ||| ||||||| || Sbjct 1279042 AAAGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 1279101 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||| |||||| || | || |||| || | | | |||||| ||| ||| Sbjct 1279102 ATACCCTCTTTGTCC-TGGATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCT---CTC 1279157 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| |||||| || || |||||||| Sbjct 1279158 CACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||||||| ||||| ||||| | || || | | || || Sbjct 1279228 ACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTGCCATCCTCC 1279287 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| || ||||| |||| | ||| ||||||| |||| | ||||||||| | Sbjct 1279288 AACTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1279347 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| | || | | | ||||| ||||||||| | || ||||| || Sbjct 1279348 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTT 1279406 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||||| |||||||||||||| Sbjct 1279407 TCCCGTTAAGGTCTTGACGAAAATCTGCAT 1279436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||||||| || || ||||| | || || | | || || Sbjct 2718995 ACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGAGTTCTGCCATCCTCC 2718936 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| |||||||| ||||| | ||| ||||||| |||| | ||| ||||| | Sbjct 2718935 AACTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCTTGG 2718876 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| | || | | | ||||| ||||||||| | || ||||| || Sbjct 2718875 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTT 2718817 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || |||||||||||||| Sbjct 2718816 TCCCGTTAGGGTTTTAACGAAAATCTGCAT 2718787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || ||| ||||||||||||||| ||||| | Sbjct 2719469 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCC 2719410 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || ||||| |||||||| |||| | ||| ||||||| || Sbjct 2719409 AAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 2719350 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| || | || |||| ||| | | ||||| |||||| Sbjct 2719349 ATACCCTCTTTGTCC-TGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCAC 2719291 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 2719290 CTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || | || ||||| || || || ||||||||| ||||| ||||||| Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||| || || ||||| || || ||||| ||||||| || Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||||| || | || | ||||| ||| || Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCAAC 1278932 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || || || ||||| |||||||||||||| Sbjct 1278933 TTCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 >seq2 Length=19698289 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| |||||||| ||||| || |||| Sbjct 19344927 CCTCCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCT 19344868 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || |||| ||||||||||| |||||||| |||| ||||| ||||||| || Sbjct 19344867 AAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 19344808 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 19344807 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCAGAGGACTCGA 19344750 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || ||||| || ||||| || || || ||||| |||||||| || Sbjct 19344749 CCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 19344698 >seq1 Length=30427671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| |||||| || ||||| || || | ||| ||||| Sbjct 24277058 AGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGA 24277117 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| ||||| || || || | ||| || |||| || | | ||| Sbjct 24277118 CCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCC 24277177 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || ||| ||| | || ||| || || ||||||| || Sbjct 24277178 TTATCCTGGATCTTAGCCTT-AACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGT 24277236 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||| ||||| || ||||||||||| Sbjct 24277237 GATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 >seq5 Length=26975502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||| || ||||| || || | Sbjct 772214 CCACCACGGAGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCA 772273 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| ||||| || || || | ||| || |||| ||| Sbjct 772274 AGGGTGCGTCCATCTTCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGA 772333 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | || | || |||| || | | | ||||| ||| || Sbjct 772334 ATTCCCTCTTTAT-CTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCAAC 772392 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || |||||||| || || ||||| || || || ||||| Sbjct 772393 CTCAAGGGTGATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 772440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || || | Sbjct 6973325 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 6973384 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || || | || || |||||||| || ||||| || || | |||||||||| | ||| Sbjct 6973385 AGAGTCCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGG 6973444 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | || || | || | | | ||| || || ||| Sbjct 6973445 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGAC-ATTATCAATTGTGTCT-GAGCTCTC 6973500 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || ||||| || || || ||||| || || |||||||| Sbjct 6973501 AACCTCAAGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAATATCTGCAT 6973551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303959548400