Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq26840 98.7 2e-15 seq13200 98.7 2e-15 seq8 98.7 2e-15 seq7 98.7 2e-15 seq6 98.7 2e-15 seq5 98.7 2e-15 seq4 98.7 2e-15 seq1 98.7 2e-15 >seq26840 Length=135763 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16429 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16370 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16369 CCCACGGTGGGC 16358 >seq13200 Length=15566 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4485 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4426 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4425 CCCACGGTGGGC 4414 >seq8 Length=40886855 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 968077 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 968136 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 968137 CCCACGGTGGGC 968148 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8930579 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8930638 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8930639 CCCACGGTGGGC 8930650 >seq7 Length=29178675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5190722 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5190663 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5190662 CCCACGGTGGGC 5190651 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 54802 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 54861 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 54862 CCCACGGTGGGC 54873 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 16479014 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 16479073 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16479074 CCCACGGTGGGC 16479085 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 33108554 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 33108611 Query 165318 GTTGG 165322 ||||| Sbjct 33108612 GTTGG 33108616 >seq5 Length=22804910 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 21039187 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21039128 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21039127 CCCACGGTGGGC 21039116 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||| |||||||| Sbjct 17146070 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGCGTTCGAGC 17146011 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17146010 CCCACGGTGGGC 17145999 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| ||| | |||||| | ||||| ||||||||||||||||| ||||| Sbjct 11144212 AAGAGATTGGGGATTTGCAGGGGATTATGTGGAGGCAATGTGGTTGATGTTGCAGCAAGA 11144153 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | || ||||| |||||| |||| || Sbjct 11144152 GAAGCCTGATGATTACGTTGTTGCAAC 11144126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||| ||||| || || || | || ||||| ||||||||||| || | ||| Sbjct 2412891 TTCTGTATGTTTCCAATTCACTACCCACAGATCTGGGAAATGTACAAGAAAGCCGAAGCA 2412832 Query 229810 ACTTTCTGGACCACTGAGGAAGT---TC-CTCTGAACGCAGACGTCGTCGACTGGCGTGA 229865 | |||||||| | || ||||| || ||| || || ||| |||||| || Sbjct 2412831 TCATTCTGGACAGCCGAAGAAGTAGATCTCTCACAAGACAACCGT----GACTGG---GA 2412779 Query 229866 GAAACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTC 229925 || ||||| |||| |||||||| |||||||||||| | || | ||| ||||| | || Sbjct 2412778 AAATCTCAACGACGGAGAACGTCACTTCATCAAACACGTACTCGCTTTCTTCGCCGCATC 2412719 Query 229926 CGATGGTATTGTGATGGAAAATCT 229949 || || || || | ||||| || Sbjct 2412718 TGACGGAATCGTACTCGAAAACCT 2412695 >seq4 Length=23266485 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7029333 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7029274 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7029273 CCCACGGTGGGC 7029262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 21702987 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21703046 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21703047 CCCACGGTGGGC 21703058 >seq1 Length=25238555 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 518651 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 518592 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 518591 CCCACGGTGGGC 518580 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 930111 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 930170 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 930171 CCCACGGTGGGC 930182 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 15203187 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15203246 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15203247 CCCACGGTGGGC 15203258 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22652844 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22652903 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22652904 CCCACGGTGGGC 22652915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057447609361730