Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 156 4e-33 >seq5 Length=22804910 Score = 156 bits (172), Expect = 4e-33 Identities = 492/743 (66%), Gaps = 21/743 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || ||||| | ||| | ||||| ||||| ||||| || || | || | || |||| Sbjct 2412023 TGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAACTCC 2412082 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || |||||||||||||| | | | | | |||| ||||| || | | || Sbjct 2412083 ATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAACAAC 2412142 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| || ||||| || | ||| ||||| | ||||| || | | ||| Sbjct 2412143 CTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCA-ACGC 2412201 Query 16856 ACC-GGAAGAGCTTC-CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || ||||| ||||| | | ||| || | ||| || ||||||| || || |||| Sbjct 2412202 ACAAGGAAGCGCTTCACATACAAACTCTCT-CTCAATCTCAACCGCATCGCAAACAATAG 2412260 Query 16914 TAGCAACTCGTTCCTCGG-ACGGT--GTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 |||| |||||| | | | ||| || ||| || |||| ||| ||| |||| Sbjct 2412261 ACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGCGA 2412317 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 |||| || ||||| || |||||||| ||| | ||||||||| || || || || |||| Sbjct 2412318 AATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCA 2412377 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | ||| |||||||| | ||| || |||| ||| || ||||| ||||||||||| | Sbjct 2412378 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 2412437 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCG-TCTTTGTTACGAATCCA 17148 | || | || ||||| | | ||||| ||| | | | | | || | || ||||| Sbjct 2412438 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCAT----CG-ATCCA 2412492 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 || |||| ||||| | | | ||| |||||||| || || |||| Sbjct 2412493 AGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAG 2412552 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | ||| |||| | || | || || || |||| || || ||||| || || Sbjct 2412553 ATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGA 2412612 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAA 17327 || || ||||| || || || || |||||||| || ||| || ||||| | | ||| | Sbjct 2412613 ATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTTGTA 2412671 Query 17328 CTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 | || || | ||||||| || || |||||| ||||| ||||| |||||||| Sbjct 2412672 CATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAG 2412730 Query 17387 AACGCCAATATATGCTTAATGAA 17409 || || | || || || ||||| Sbjct 2412731 AAAGCGAGTACGTGTTTGATGAA 2412753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517365940514280