Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 >seq5 Length=22804910 Score = 140 bits (154), Expect = 3e-28 Identities = 486/741 (66%), Gaps = 17/741 (2%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || ||||||| ||| | ||||| || || ||||| || || | |||| || ||| Sbjct 2412023 TGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAACTCC 2412082 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTAACTAA 16032 || ||||||| |||||| | | | | | ||| ||||| || | | |||| || Sbjct 2412083 ATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAAC-AA 2412141 Query 16033 TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCG 16092 ||||| || ||||| || ||||| |||| ||| || || | ||| || || | | || Sbjct 2412142 CCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA-CG 2412200 Query 16093 TACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || ||||| |||| || ||| | | || ||| ||||||| || || ||| Sbjct 2412201 CACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAATAG 2412260 Query 16152 CGGTGGCTCGTGTTTCAG-ACGGT--GTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 | ||| | ||| | | | ||| | || || |||| | | ||| |||| Sbjct 2412261 ACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGCGA 2412317 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 | || || |||| ||||||||||| ||| | |||||| || |||||||| || |||| Sbjct 2412318 AATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCA 2412377 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | ||| |||||||| | |||||| |||| | || || || || ||||||||||| | Sbjct 2412378 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 2412437 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388 ||||| | || || || | | ||||| ||| | || | | || || ||||| Sbjct 2412438 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCAT--CG-ATCCAAG 2412494 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || ||||| ||||| | | | |||| |||||||| || || || | | Sbjct 2412495 TCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGAT 2412554 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 ||| |||| | |||| | || || || || | || | | ||||| ||||| | Sbjct 2412555 GATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAAT 2412614 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCGCTATTTGTACT 16567 | || ||||| || || || || ||||| ||||| ||| || || || | | |||||| Sbjct 2412615 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTTGTACA 2412673 Query 16568 TC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 || || | |||||| || ||||| || ||||| |||||| ||| || || || Sbjct 2412674 TCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAA 2412732 Query 16627 CGCCAATATGTGCTTAATGAA 16647 || | || ||| || ||||| Sbjct 2412733 AGCGAGTACGTGTTTGATGAA 2412753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511236868883720