Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 >seq2 Length=28351830 Score = 122 bits (134), Expect = 7e-23 Identities = 253/369 (69%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | ||||| || ||| | ||| || || | || |||| || || || || Sbjct 16613781 CAAGGATTTGATCAACTCGCAGA-TGTAATCGACAAGATCAAAAACAATCCTGATGATCG 16613839 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 || || || ||||| |||||||||| ||| | || |||| ||| |||||||| Sbjct 16613840 GCGCATTATATTATCGGCTTGGAATCCTTCTGATCTTAAGTTGATGGCACTTCCTCCATG 16613899 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 |||| ||| ||||| || |||||| | || || | || || ||| | || ||| | Sbjct 16613900 CCACATGTTTGCACAGTTCTATGTTGCAGAAGGGGAGCTCTCATGTCAAATGTATCAGCG 16613959 Query 19049 ATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTA 19108 || | ||||||||| ||||| || ||||| ||||||||| || | |||||||| | Sbjct 16613960 TTCAGCGGATATGGGTCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTG 16614019 Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168 |||| | || || || | ||| | || ||||| || ||| || |||||||| Sbjct 16614020 CATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGC 16614079 Query 19169 ACATATTTACTTGAATCATATAGATGCTT-TAAAAGTGCAGCTAGCTCGATCC-CCAAAA 19226 ||| | ||| |||||| | || || | | ||| ||| || | |||| |||||| Sbjct 16614080 TCATGTGTACAAAAATCATGT-GAGGCCTCTGCAAGAGCAACTT-CAGAATCCACCAAAA 16614137 Query 19227 CCTTTTCCT 19235 ||||||||| Sbjct 16614138 CCTTTTCCT 16614146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399368784250695